Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,778,340 – 10,778,444 |
Length | 104 |
Max. P | 0.898880 |
Location | 10,778,340 – 10,778,444 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 97.44 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -25.62 |
Energy contribution | -25.73 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.22 |
Structure conservation index | 0.95 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.898880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10778340 104 - 22224390 UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGGCAUCCGUGCUUGUGUUUGCUUUGGCUUUUGUUAU ...........((((((((((...(((....))).((((.((((((.((((.(((..........))).)))).)))))).)))).....)))))))))).... ( -27.00) >DroSec_CAF1 27858 104 - 1 UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGACAUCGGUGGUGGUGUUUGCUUUGGCUUUUGUUAU ...........(((((((((....((((..((((((((((......))))))).)))..))))((((.(((((((....))))))).))))))))))))).... ( -27.20) >DroSim_CAF1 26521 104 - 1 UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGGCAUCGGUGGUGGUGUUUGCUUUGGCUUUUGUUAU ...........(((((((((....((((..((((((((((......))))))).)))..))))((((..((((((....))))))..))))))))))))).... ( -27.10) >consensus UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGGCAUCGGUGGUGGUGUUUGCUUUGGCUUUUGUUAU ...........(((((((((....((((..((((((((((......))))))).)))..))))((((..(((((......)))))..))))))))))))).... (-25.62 = -25.73 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:49 2006