Locus 4075

Sequence ID X_DroMel_CAF1
Location 10,777,497 – 10,777,588
Length 91
Max. P 0.500000
window6702

overview

Window 2

Location 10,777,497 – 10,777,588
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 99.27
Mean single sequence MFE -28.31
Consensus MFE -27.87
Energy contribution -28.20
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.98
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10777497 91 - 22224390
UGCACGCCUAACUGUUUGCGAUCGUAUACCGUUGGCAGCGCAGCGUUCUUGGCUUCUUUUGGCUUGCCAUGAUUUGCCAAAACGUCGCCGA
.((..(((.(((.((.(((....))).)).)))))).))((.(((((.(((((.((...(((....))).))...)))))))))).))... ( -30.00)
>DroSec_CAF1 27041 91 - 1
UGCACGCCUAACUGUUUGCGAUCGUAUACCGUUGGCAGCGCAGCGUUCUUGGCUUCUUUUCGCUUGCCAUGAUUUGCCAAAACGUCGCCGA
.((..(((.(((.((.(((....))).)).)))))).))((.(((((.(((((.((..............))...)))))))))).))... ( -24.94)
>DroSim_CAF1 25694 91 - 1
UGCACGCCUAACUGUUUGCGAUCGUAUACCGUUGGCAGCGCAGCGUUCUUGGCUUCUUUUGGCUUGCCAUGAUUUGCCAAAACGUCGCCGA
.((..(((.(((.((.(((....))).)).)))))).))((.(((((.(((((.((...(((....))).))...)))))))))).))... ( -30.00)
>consensus
UGCACGCCUAACUGUUUGCGAUCGUAUACCGUUGGCAGCGCAGCGUUCUUGGCUUCUUUUGGCUUGCCAUGAUUUGCCAAAACGUCGCCGA
.((..(((.(((.((.(((....))).)).)))))).))((.(((((.(((((.((...(((....))).))...)))))))))).))... (-27.87 = -28.20 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:48 2006