Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,777,120 – 10,777,220 |
Length | 100 |
Max. P | 0.500000 |
Location | 10,777,120 – 10,777,220 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -15.26 |
Energy contribution | -15.32 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.50 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10777120 100 - 22224390 UCCGAACGCGAAUCCAAAAAGUUUCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCGAAUGUAUCUUCGAUGAGCUCACCGCAAUACCGAACCUUUAUUA .......(((................((((((((....))))))))(((....((((((......)))))).)))....))).................. ( -20.90) >DroSec_CAF1 26667 99 - 1 UCCAAAUACGAAUUCAUGAAGU-UCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCGAAUGAAUCUUCGAUGAGCUCAUCGCAAUACCGAACCUUUAUUA ...............(((((((-((.((((((((....))))))))(((....((((((......)))))).))).............))).)))))).. ( -21.70) >DroSim_CAF1 25320 99 - 1 UCCAAAUACGAAUCCAUGAAGU-UCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCAAAUGCAUCUUCGAUGAGCUCAUCGCAAUACCGAACCUUUAUUA ...............(((((((-((...(((((....(((((.((((.......)))).)))))....((((....)))))))))...))).)))))).. ( -20.50) >DroYak_CAF1 26293 96 - 1 ---GUAUUCGAAUUCAAAAAGU-UCAUGGUUGCACACGUGCAAUUGGCUUGAAAUCGAAUGCAUCUUCGAUGAGCUCACCGCAAUGCCGAAACUCUAUUA ---((((((((.((((...(((-(...(((((((....))))))))))))))).))))))))...((((....((.....)).....))))......... ( -23.50) >consensus UCCAAAUACGAAUCCAAAAAGU_UCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCGAAUGCAUCUUCGAUGAGCUCACCGCAAUACCGAACCUUUAUUA .................((((..((.((((((((....))))))))(((....((((((......)))))).))).............))..)))).... (-15.26 = -15.32 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:47 2006