Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,776,242 – 10,776,341 |
Length | 99 |
Max. P | 0.603968 |
Location | 10,776,242 – 10,776,341 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.01 |
Mean single sequence MFE | -11.20 |
Consensus MFE | -9.90 |
Energy contribution | -9.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.88 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10776242 99 + 22224390 UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCAAAUCGGCGUUAAAUAGAAAAAAAAAAAUAUUAAGAAUCACAAACAAC ...............((((((((.......(((.....))).((.....))...))))))))..................................... ( -10.50) >DroSec_CAF1 25708 95 + 1 UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCAAAUCGGCGUUAAACAGAAA----AAAAUAUUAAGAAUCACAAACAAC ...............((((((((.......(((.....))).((.....))...)))))))).........----........................ ( -10.50) >DroSim_CAF1 24347 95 + 1 UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCGAAUCGGCGUUAAACAGAAA----AAAAUAUUAAGAAUCACAAACAAC ...............((((((((.......(((.....)))(((.....)))..)))))))).........----........................ ( -12.50) >DroEre_CAF1 23482 94 + 1 UCACCGAAAUUCAAAAGCGUCGACACUU-UUUGACAAACAACGCAACAAGCAAAUCGGCGUAAAAUAGAAAA----AAAUAUUAAGAAUCACAAACAAC .....(..((((....(((((((..(((-.(((.(.......)))).)))....)))))))..((((.....----...))))..))))..)....... ( -11.30) >consensus UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCAAAUCGGCGUUAAACAGAAA____AAAAUAUUAAGAAUCACAAACAAC ...((((...........(((((.......))))).......((.....))...))))......................................... ( -9.90 = -9.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:46 2006