Locus 4071

Sequence ID X_DroMel_CAF1
Location 10,773,296 – 10,773,399
Length 103
Max. P 0.683027
window6696

overview

Window 6

Location 10,773,296 – 10,773,399
Length 103
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 66.91
Mean single sequence MFE -47.12
Consensus MFE -15.77
Energy contribution -16.47
Covariance contribution 0.70
Combinations/Pair 1.41
Mean z-score -1.87
Structure conservation index 0.33
SVM decision value 0.31
SVM RNA-class probability 0.683027
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10773296 103 - 22224390
----UCCUGCUGGUGCCGGUUGUGGAC---CGCCACCGUAGCUAAGAUCGUAGCUAUUCGGCUGCGGUUUCUGUGGCCGAUAGGAGGCGAAACCAGGCAGAGGU-----GGCUGC
----..(..((..((((((((......---((((.(((((((((......)))))))(((((..(((...)))..)))))..)).)))).)))).))))..)).-----.).... ( -45.40)
>DroVir_CAF1 27058 112 - 1
CACCGCCCGC-AGCGCCCGCU--GCGCCGCCACCCGAAUAGCUCAAAUCAAAGCCGCUCGGCUGCGGCUUCUGUGGCCGAUAAGGCGCAAAGCCGGGCGGCAAAUUGGGCGCUGU
((.(((((((-(((....)))--))((((((..((((...(((........)))...))))...((((((.((((.((.....)))))))))))))))))).....))))).)). ( -57.80)
>DroPse_CAF1 39690 110 - 1
--CCUCCUGCACUGCCUGCACCGCCAC---CACCGCCGUAGCUCAAAUCGUAGCUGUUCGGCUGCGGCUUCUGGGGGCGGUAGGGGGCGAAUCCAGGCGGCAAAUUGGGUACCCC
--((.((((...(((((.(((((((.(---((..(((((((((................)))))))))...))).)))))).).)))))....)))).))......((....)). ( -48.59)
>DroEre_CAF1 20359 100 - 1
----UCCC---GCCGCUGGCUGUGGUC---CGCCACCGUAGCUGAGGUCGUAGCUGUUCGGCUGCGGUUUCUGUGGCCGAUAGGAGGCGAAGCCAGGCAGUGGU-----GGCUGC
----..((---(((((((.(((.(.(.---((((.((.((((((......)))))).(((((..(((...)))..)))))..)).)))).).)))).)))))))-----)).... ( -53.10)
>DroYak_CAF1 22217 100 - 1
----UCCU---GGCGUUGGUUGUGGUC---CACCACCGUAGCUCAGAUCGUAGCUAUUCGGCUGCGGUUUCUGUGGCCGAUAGGAGGCGAAUCCGGGCAGAGGA-----GGCUGC
----((((---.(((.((((.(....)---.)))).))).((((.((((((..((..(((((..(((...)))..)))))..))..))).))).))))..))))-----...... ( -39.80)
>DroAna_CAF1 31808 99 - 1
----GCCU---GGUCC------UACCC---CUCCGCCGUAGCUCAAAUCAUAGCUAUUCGGCUGAGGCUUUUGUGGGCGGUACGGAGCAAAGCCAGGCGGAAGAUUUGGAGCUCC
----((((---((...------..))(---(((.(((((((((........)))))..)))).)))).......)))).....(((((....((((((....).))))).))))) ( -38.00)
>consensus
____UCCU___GGCGCUGGCUGUGCAC___CACCACCGUAGCUCAAAUCGUAGCUAUUCGGCUGCGGCUUCUGUGGCCGAUAGGAGGCGAAGCCAGGCAGAAGA_____GGCUGC
.....(((.....((((.....................(((((........))))).((((((((((...)))))))))).....)))).....))).................. (-15.77 = -16.47 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:43 2006