Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,762,047 – 10,762,164 |
Length | 117 |
Max. P | 0.638346 |
Location | 10,762,047 – 10,762,164 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.14 |
Mean single sequence MFE | -49.93 |
Consensus MFE | -28.09 |
Energy contribution | -30.28 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.56 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10762047 117 - 22224390 CCGCUCGAGGAGCUCGACACGGAGCUGCUCGGCGAGAAGCUCUUCUCGCCAUUGACGAACUUGUGAGCUUGUCCAGAACCAGGCACCGGAUUGGGAUUCUCCUCGCCGGCGGGACUG (((((((((((((((((..(((.(((..((((((((((....))))))))...(((((.((....)).)))))..))....))).)))..)))))...)))))))..)))))..... ( -52.80) >DroVir_CAF1 11495 102 - 1 CCGCUGGACGAGCUUGAGACGGAGCUGCUGGGCGAGAAGCUCUUCUCGCCGUUCAUGAACUUGGGCGC---------------CAGCGUAUUGGGAUUCUCCUCGCCGGCGGGACUG (((((((.((((...(((((.((..(((((((((((((....)))))))((((((......)))))))---------------)))))..)).)...)))))))))))))))..... ( -48.40) >DroPse_CAF1 27851 117 - 1 CCGCUCGAGGAGCUGGAAACCGAGCUGCUGGGCGAGAAACUCUUCUCGCCGUUCAUGAACUUCUGGCCAGCGGCGGAGCUGGGCGCAGGAUUGGGGUUCUCCUCGCCGGCGGGACUG ((((((((((((...((..((((.((((..((((((((....))))))))..............(.(((((......))))).)))))..))))..)))))))))..)))))..... ( -56.50) >DroGri_CAF1 11367 102 - 1 CCGCUGGACGAGCUGGAAACGGAGCUGCUGGGCGAGAAGCUCUUCUCGCCAUUCAUAAACUUGGGCGC---------------CAGCGUAUUGGGAUUCUCCUCGCCGGCAGGACUA (((((((.((((..(((..(.((..(((((((((((((....)))))))).((((......))))...---------------)))))..)).)..)))..))))))))).)).... ( -42.50) >DroAna_CAF1 20055 117 - 1 CCACUCGAGGAGCUGGACACAGAGCUGCUCGGCGAGAAGCUUUUCUCGCCAUUCAUAAACUUUUGCCCUGCACCCGAUCCCGGCACUGGGUUGGGAUUCUCCUCGCCAGCAGGACUG ......(((.((((........)))).)))((((((((....))))))))................(((((..(((....))).....(((.(((.....))).))).))))).... ( -42.90) >DroPer_CAF1 20476 117 - 1 CCGCUCGAGGAGCUGGAAACCGAGCUGCUGGGCGAGAAACUCUUCUCGCCGUUCAUGAACUUCUGGCCAGCGGCGGAGCUGGGCGCAGGAUUGGGGUUCUCCUCGCCGGCGGGACUG ((((((((((((...((..((((.((((..((((((((....))))))))..............(.(((((......))))).)))))..))))..)))))))))..)))))..... ( -56.50) >consensus CCGCUCGAGGAGCUGGAAACGGAGCUGCUGGGCGAGAAGCUCUUCUCGCCAUUCAUGAACUUGUGCCC_GC__C_GA_C__GGCACCGGAUUGGGAUUCUCCUCGCCGGCGGGACUG ((((((((((((((.((..(((.(((....((((((((....)))))))).........(....)................))).)))..)).))...)))))))..)))))..... (-28.09 = -30.28 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:28 2006