Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,759,352 – 10,759,452 |
Length | 100 |
Max. P | 0.966750 |
Location | 10,759,352 – 10,759,452 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 75.63 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -15.78 |
Energy contribution | -15.90 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.18 |
Mean z-score | -2.31 |
Structure conservation index | 0.58 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10759352 100 + 22224390 GGCAGAAAAUAGGGGGGAAAUAGGGGAGAGUUUUGUUUAUUUUAUAUUCGUAUUCUGGUUUUU-------UUUUGCCGGGCAAGGCAUUUGCCGGGGUUUUCCUCUU ..........(((((((((((.((.(((.(((((((......(((....)))..(((((....-------....)))))))))))).))).))...))))))))))) ( -27.30) >DroSim_CAF1 6407 103 + 1 GGUGGAAAAUAGGG-GGAAAUAGGGGAGAGUUUUGUUUAUUUUAUAUUCGUUUUCUUGUUUUUUUAUUUUUUUUGCCGGGCAGGGCAUUUGCCGGGGUUUACCU--- ((..(((((...((-(((((((((..((.....(((.......)))....))..)))))))))))...)))))..)).(((((.....)))))(((.....)))--- ( -27.40) >DroEre_CAF1 7823 90 + 1 GGGAGAAAAUAGG---GAAACAGGGGAGAGUUUUGUUUAUUUUAU--------UCUUCUUU------UUUUUUUGCGGGGUAGACCAUUUUCCGGGGGUUUCCCCCU .((((((..((((---((((.((((((((((............))--------))))))))------)))))))).((......)).))))))(((((...))))). ( -27.20) >consensus GGCAGAAAAUAGGG_GGAAAUAGGGGAGAGUUUUGUUUAUUUUAUAUUCGU_UUCUUGUUUUU____UUUUUUUGCCGGGCAGGGCAUUUGCCGGGGUUUUCCUC_U ((((((..((((((...((((((((.....)))))))).))))))............................((((......))))))))))((((....)))).. (-15.78 = -15.90 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:27 2006