Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,757,517 – 10,757,615 |
Length | 98 |
Max. P | 0.936068 |
Location | 10,757,517 – 10,757,615 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -15.24 |
Energy contribution | -15.20 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.29 |
Structure conservation index | 0.59 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10757517 98 + 22224390 AGAUCCUGUCCAUGCACAAGCACUUGCAUAUAGGAUG---CACAUACACGUACGUGCAUGUGCGCAAGGACACGAUGCUGC-UGACGACCAAACAACUCAAU (((((.(((((.(((....((....)).........(---(((((.(((....))).))))))))).))))).))).))..-.................... ( -28.80) >DroSec_CAF1 7266 98 + 1 AGAUCCUGUCCAUGCACAAGCACUUGCAUAUGGGAUG---UACAUACACGUGCAUACAUGUACGCAAGGACACGAUGCUGC-UGACGACCAAACAACUCAAU (((((.(((((.(((....((....))(((((..(((---(((......)))))).)))))..))).))))).))).))..-.................... ( -26.50) >DroSim_CAF1 4579 98 + 1 AGAUCCUGUCCAUGCACAAGCACUUGCAUAUGGGAUG---UACAUACACGUGCAUACAUGUGCGCAAGGACACGAUGCUGC-UGACGACCAAACAACUCAAU (((((.(((((.(((....)))...(((((((..(((---(((......)))))).)))))))....))))).))).))..-.................... ( -28.90) >DroEre_CAF1 6136 82 + 1 ACAUCCUGUCCAUGCACAAGCACUUGCAUAUAGGAUG-------------------CAUGUGCGCAAGGACACGUUGCCAC-UCACGACCAUACAACUCAAU ......(((((.(((....((((.(((((.....)))-------------------)).))))))).))))).((((....-...))))............. ( -22.40) >DroYak_CAF1 8001 91 + 1 GGAUCCUGUCCAUGCACAAGCACUUGCAUAUAGGAGGAUGUAC-----------UAGAUGUGCGCAAGGACACGAUGCUGCCAUACAAGCAUACAACUCAAU ..(((.(((((.(((....)))...((((((...((......)-----------)..))))))....))))).)))(((........)))............ ( -23.30) >consensus AGAUCCUGUCCAUGCACAAGCACUUGCAUAUAGGAUG___UACAUACACGU_C_UACAUGUGCGCAAGGACACGAUGCUGC_UGACGACCAAACAACUCAAU ..(((((((..(((((........))))))))))))......................(((.(....).))).............................. (-15.24 = -15.20 + -0.04)
Location | 10,757,517 – 10,757,615 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -21.30 |
Energy contribution | -23.66 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.17 |
Mean z-score | -2.38 |
Structure conservation index | 0.67 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10757517 98 - 22224390 AUUGAGUUGUUUGGUCGUCA-GCAGCAUCGUGUCCUUGCGCACAUGCACGUACGUGUAUGUG---CAUCCUAUAUGCAAGUGCUUGUGCAUGGACAGGAUCU .....((((((........)-)))))(((.(((((.(((((((((((((....)))))))))---).........((((....))))))).))))).))).. ( -39.20) >DroSec_CAF1 7266 98 - 1 AUUGAGUUGUUUGGUCGUCA-GCAGCAUCGUGUCCUUGCGUACAUGUAUGCACGUGUAUGUA---CAUCCCAUAUGCAAGUGCUUGUGCAUGGACAGGAUCU .....((((((........)-)))))(((.(((((....(((((.....((((.(((((((.---......))))))).)))).)))))..))))).))).. ( -31.40) >DroSim_CAF1 4579 98 - 1 AUUGAGUUGUUUGGUCGUCA-GCAGCAUCGUGUCCUUGCGCACAUGUAUGCACGUGUAUGUA---CAUCCCAUAUGCAAGUGCUUGUGCAUGGACAGGAUCU .....((((((........)-)))))(((.(((((.((((((.......((((.(((((((.---......))))))).)))).)))))).))))).))).. ( -34.30) >DroEre_CAF1 6136 82 - 1 AUUGAGUUGUAUGGUCGUGA-GUGGCAACGUGUCCUUGCGCACAUG-------------------CAUCCUAUAUGCAAGUGCUUGUGCAUGGACAGGAUGU .....(((((.....(....-)..))))).(((((.(((((((.((-------------------(((.....))))).))))....))).)))))...... ( -27.60) >DroYak_CAF1 8001 91 - 1 AUUGAGUUGUAUGCUUGUAUGGCAGCAUCGUGUCCUUGCGCACAUCUA-----------GUACAUCCUCCUAUAUGCAAGUGCUUGUGCAUGGACAGGAUCC .....((((((((....))).)))))(((.(((((.((((((.....(-----------((((................))))))))))).))))).))).. ( -26.89) >consensus AUUGAGUUGUUUGGUCGUCA_GCAGCAUCGUGUCCUUGCGCACAUGUA_G_ACGUGUAUGUA___CAUCCUAUAUGCAAGUGCUUGUGCAUGGACAGGAUCU .....(((((.((.....)).)))))(((.(((((.(((((((((((((....))))))))..............((....))..))))).))))).))).. (-21.30 = -23.66 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:22 2006