Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,752,115 – 10,752,229 |
Length | 114 |
Max. P | 0.983402 |
Location | 10,752,115 – 10,752,229 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 95.61 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -33.71 |
Energy contribution | -33.77 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -3.03 |
Structure conservation index | 0.91 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10752115 114 + 22224390 CAACGAAUUCUGGCCAAAAGCUGUGCAAAUUGAUUGAGUCCAGUGAAAAAUCAGUGGAAAUCAAUUGCCCCAGUCCUUGUGGCAUACGCAACGUGACAGAAAGUGGCCAAAAGU ..........((((((....((((.((..((((((((.((((.(((....))).))))..)))))((((.(((...))).))))....)))..))))))....))))))..... ( -35.10) >DroSec_CAF1 1567 114 + 1 CAACGAAUUCUGGCCAAAAGCUGUGCAAAUUGAUUGAGUCCAGUGAAAAAUCGGUGGAAAUCAAUUGCCCCAGUCCUUGUGGCAUACGCAACGUGCCAGAUAGUGGCCAAAANN ..........((((((....(((.(((..((((((((.((((.(((....))).))))..)))))((((.(((...))).))))....)))..))))))....))))))..... ( -36.50) >DroEre_CAF1 851 114 + 1 CAACGAAUUGUGGCCAAAAGCUGUGCAAAUUGAUUGAGUCCAGUGAAAAAUCAGUGGAAAUCAAUUGCCCCAGUCCUUGUGGCACACGCAACGUGCCUGAAAGUGGCCCAAAGU .......(((.(((((...((((.((((.((((((...((((.(((....))).))))))))))))))..)))).(((..(((((.......)))))...)))))))))))... ( -39.10) >DroYak_CAF1 750 114 + 1 CAACGAAUUCUGGCCAAAAGCUGUGCAAAUUGAUUGAGUCCAGUGAAAAAUCAGUGGAAAUCAAUUGCCCCAGUCCUUGUGGCACACGCAACGUGCCUGAAAGUGGCCCAAAGU ...........(((((...((((.((((.((((((...((((.(((....))).))))))))))))))..)))).(((..(((((.......)))))...))))))))...... ( -36.80) >consensus CAACGAAUUCUGGCCAAAAGCUGUGCAAAUUGAUUGAGUCCAGUGAAAAAUCAGUGGAAAUCAAUUGCCCCAGUCCUUGUGGCACACGCAACGUGCCAGAAAGUGGCCAAAAGU ...........(((((...((((.((((.((((((...((((.(((....))).))))))))))))))..)))).(((..(((((.......)))))...))))))))...... (-33.71 = -33.77 + 0.06)
Location | 10,752,115 – 10,752,229 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 95.61 |
Mean single sequence MFE | -36.85 |
Consensus MFE | -34.25 |
Energy contribution | -36.00 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.74 |
Structure conservation index | 0.93 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10752115 114 - 22224390 ACUUUUGGCCACUUUCUGUCACGUUGCGUAUGCCACAAGGACUGGGGCAAUUGAUUUCCACUGAUUUUUCACUGGACUCAAUCAAUUUGCACAGCUUUUGGCCAGAAUUCGUUG ..(((((((((....((((((.((((....((((.((.....)).))))(((((..((((.(((....))).)))).))))))))).)).))))....)))))))))....... ( -34.70) >DroSec_CAF1 1567 114 - 1 NNUUUUGGCCACUAUCUGGCACGUUGCGUAUGCCACAAGGACUGGGGCAAUUGAUUUCCACCGAUUUUUCACUGGACUCAAUCAAUUUGCACAGCUUUUGGCCAGAAUUCGUUG ..(((((((((.....(((((.........))))).((((.(((..((((((((((((((..((....))..))))...)))))).)))).))))))))))))))))....... ( -34.80) >DroEre_CAF1 851 114 - 1 ACUUUGGGCCACUUUCAGGCACGUUGCGUGUGCCACAAGGACUGGGGCAAUUGAUUUCCACUGAUUUUUCACUGGACUCAAUCAAUUUGCACAGCUUUUGGCCACAAUUCGUUG ...((((((((......((((((.....))))))..((((.(((..((((((((((((((.(((....))).))))...)))))).)))).)))))))))))).)))....... ( -39.50) >DroYak_CAF1 750 114 - 1 ACUUUGGGCCACUUUCAGGCACGUUGCGUGUGCCACAAGGACUGGGGCAAUUGAUUUCCACUGAUUUUUCACUGGACUCAAUCAAUUUGCACAGCUUUUGGCCAGAAUUCGUUG ......(((((......((((((.....))))))..((((.(((..((((((((((((((.(((....))).))))...)))))).)))).))))))))))))........... ( -38.40) >consensus ACUUUGGGCCACUUUCAGGCACGUUGCGUAUGCCACAAGGACUGGGGCAAUUGAUUUCCACUGAUUUUUCACUGGACUCAAUCAAUUUGCACAGCUUUUGGCCAGAAUUCGUUG ..(((((((((......((((((.....))))))..((((.(((..((((((((((((((.(((....))).))))...)))))).)))).))))))))))))))))....... (-34.25 = -36.00 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:15 2006