Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,737,413 – 10,737,506 |
Length | 93 |
Max. P | 0.657019 |
Location | 10,737,413 – 10,737,506 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 88.48 |
Mean single sequence MFE | -22.95 |
Consensus MFE | -17.44 |
Energy contribution | -17.95 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -1.63 |
Structure conservation index | 0.76 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10737413 93 - 22224390 AAA--AAAGGUCGCUGGUCAAGCUGAUCAGCAAAAACAGAGCACACAGUGGGCCGUGAGAAGUGAUCCUCACAUCCGAAGCACACAAUAGCAAUA ...--...(((((((((((.....)))))))..........(((...)))))))(((((........))))).......((........)).... ( -25.40) >DroSec_CAF1 13242 92 - 1 AAA--AAAGGUCGCUGGCCAAGCUGAUCCGCAAAAACAGAGCACACAGUGGGUCGUGAUAAGUAAUGCUCGCAUCCGAACCGCACAAUA-CGAUA ...--...(((.....)))..((.(((((((................)))))))((((..(....)..)))).........))......-..... ( -17.59) >DroEre_CAF1 13446 93 - 1 AAA--AAAGGUCGCUGGCCAAGCUGAUCAGCGAAAACAGAGCACACAGUGGGUCGGGAAAAGUGAUGCUCGCAUCCAAACUACCCAAUAGCGAUA ...--....((((((((((..((((....((.........))...)))).))))(((...(((((((....))))...))).)))...)))))). ( -26.00) >DroYak_CAF1 13513 95 - 1 AAAAAAAAGGUCGCUGGCCAAGCUGAUCAACAAAAACUGAGCACACAGUGGGUCGUGAUAAGUGAUGCUCGCAUCCAAACGACACAAUAGCGAUA .........(((((((.((..((((.(((........))).....))))))(((((.....(.((((....)))))..)))))....))))))). ( -22.80) >consensus AAA__AAAGGUCGCUGGCCAAGCUGAUCAGCAAAAACAGAGCACACAGUGGGUCGUGAUAAGUGAUGCUCGCAUCCAAACCACACAAUAGCGAUA .........((((((((((..((((....((.........))...)))).))))(((......((((....)))).......)))...)))))). (-17.44 = -17.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:09 2006