Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,181,014 – 1,181,104 |
Length | 90 |
Max. P | 0.940136 |
Location | 1,181,014 – 1,181,104 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.14 |
Mean single sequence MFE | -28.65 |
Consensus MFE | -17.74 |
Energy contribution | -18.05 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.22 |
Mean z-score | -2.67 |
Structure conservation index | 0.62 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.940136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1181014 90 - 22224390 ---------UCUGCCAAGAGCUCUUCAGCCAGCUGGAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGUCGGAUCUCCAGCAGGUCCUGU ---------(((((.(((((((.(((((....)))))..)))))))...(((((((((........)))))))))....((....)).)))))...... ( -31.70) >DroSec_CAF1 16873 97 - 1 --CUUCUCCUCUACCAAGAGCUCUUCAGCCAGCUGGAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGUCGAAUCUCCAGCAGGUCUUGU --.....(((((...(((((((.(((((....)))))..)))))))...(((((((((........)))))))))............)).)))...... ( -27.40) >DroSim_CAF1 31961 99 - 1 GACUUCUCCUCUACCAAGAGCUCUUCAGCCAGCUGUAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAAUUUUCGGAUCUCCAGCAGGUCUUGU (((((((......(((((((((...(((....)))....)))))))...(((((((((........)))))))))....))......)).))))).... ( -27.20) >DroEre_CAF1 16241 97 - 1 --UUUAUCCUCCACCAAGAGCUCCUCAGCUAGUUGGAUCAGCUCUUCCUGUUCGUGCACCCAACCCUGCAUGAACUGGCGUAUCUCCAGCAGGUCCUGU --..........(((...((((....)))).((((((...((....((.(((((((((........))))))))).)).))...)))))).)))..... ( -27.40) >DroYak_CAF1 19107 97 - 1 --UUUAUCCUCCAUCAAGAGCUGCUCAGCUAGUUGGAUCAGCGUCUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGGCGUAUCUCCAGCAGGUCCUGU --.....(((........((((....)))).((((((...(((((....(((((((((........))))))))).)))))...)))))))))...... ( -32.10) >DroMoj_CAF1 6545 97 - 1 --AUACUCCGCUUGCAGCAGUUGCUCGGCCAGCUGGAGUAUCUUGUCCUGUUCAUCCACCCACUGCUUCAUAAAAUUGUGAAUCUCCUGCAGGUCGUGC --((((((((((.(((((....)))..)).))).)))))))...............(((...((((((((((....))))))......))))...))). ( -26.10) >consensus __CUUCUCCUCUACCAAGAGCUCCUCAGCCAGCUGGAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGGCGAAUCUCCAGCAGGUCCUGU ...........................(((.((((((............(((((((((........))))))))).........)))))).)))..... (-17.74 = -18.05 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:49 2006