Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,732,434 – 10,732,531 |
Length | 97 |
Max. P | 0.796055 |
Location | 10,732,434 – 10,732,531 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 72.73 |
Mean single sequence MFE | -24.57 |
Consensus MFE | -11.86 |
Energy contribution | -12.53 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.14 |
Mean z-score | -2.40 |
Structure conservation index | 0.48 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10732434 97 + 22224390 AAAUCAUCAGGUGUCAUAAGUUUGGUGCGAACUCUACUUACUCAUUAGAGUUCCCAGUGAUUAGAGUUAUUGGAGAAACGUACAGACAGGCUAUAGA-- ..................((((((((((((((((((.........))))))))((((((((....))))))))......))))...)))))).....-- ( -24.00) >DroEre_CAF1 8642 80 + 1 GAAUCAUCAGGUGUCAAACGUUUGGCGAGAACGCUA----CUCAUUAU---GGUCAAUGAUUAGAGUUCUUGGAGA------------CGCCAUAAAGA .........((((((...(....).(((((((.(((----.(((((..---....))))).))).)))))))..))------------))))....... ( -23.30) >DroYak_CAF1 8548 88 + 1 AAAUCAUUAGGUGUCAAACGUUUGGCGAGAACUCUA----CUCAUUAU---UGCCAAUGAUUAGAGUUCUAGGAGAAGCG----GACAUGCCAUAAAGA .........(((((....(((((..(.(((((((((----.(((((..---....))))).)))))))))..)..)))))----...)))))....... ( -26.40) >consensus AAAUCAUCAGGUGUCAAACGUUUGGCGAGAACUCUA____CUCAUUAU___UGCCAAUGAUUAGAGUUCUUGGAGAA_CG____GACACGCCAUAAAGA .........(((((((......))))((((((((((.....(((((.........))))).))))))))))..................)))....... (-11.86 = -12.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:05 2006