| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,723,141 – 10,723,231 |
| Length | 90 |
| Max. P | 0.612660 |
| Location | 10,723,141 – 10,723,231 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 62.21 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -6.32 |
| Energy contribution | -7.48 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10723141 90 + 22224390 CUA-----AAGCUGUU-----------UGAAUAAAAAUGAAAUAGCGUUUCAAAUUCAAAACAGCUCAAUUGGUUAUUCUAUUGUUAAUACAUUUCGACCAAUUAC ...-----.(((((((-----------(((((..(((((......)))))...)))).)))))))).((((((((.......(((....)))....)))))))).. ( -20.10) >DroSec_CAF1 12008 73 + 1 --------AAGCUGUU-----------UGAGUAAAAAUGAAAUGGCGUUUGAAAUUCAAAACAGCUCACUGGGUUAUUCC------------UUCUGACCAAUU-- --------.(((((((-----------(((((..(((((......)))))...)))).)))))))).....(((((....------------...)))))....-- ( -18.10) >DroSim_CAF1 12286 75 + 1 --------AAGCUGUU-----------UGAGUUAAAAUGAAAUGGCGUUUGAAAUUCAAAACAGCUCACUGGGUUAUUCC------------UUCUGACCAAUUAA --------.(((((((-----------((((((.(((((......)))))..))))).)))))))).....(((((....------------...)))))...... ( -19.10) >DroEre_CAF1 7192 98 + 1 CCAA------GCUGUUUUGAAAACACUUGAGUAAAAAUGGAAUGUUGCUUUAAAUUAUAAACAGCUCGCUUGGUUAUACUAUUAUCAUUACUCGUAGACCAACA-- ...(------(((((((...........((((((..........))))))........)))))))).(.((((((.(((..............)))))))))).-- ( -15.55) >DroYak_CAF1 11891 103 + 1 CCAAGCCGAAGCUGUUUUUAAAAUAGUUGAAUAAAAAUGAUUU-CAUUUUUACAUUUUAAACCGCUCGCAGGGUUAUAUUACUAUCAUUACUCUUAGACCCACA-- ....((.((.((.(((..((((((.((.....(((((((....-)))))))))))))))))).)))))).(((((.....................)))))...-- ( -16.00) >consensus C_A_____AAGCUGUU___________UGAGUAAAAAUGAAAUGGCGUUUGAAAUUCAAAACAGCUCACUGGGUUAUUCUA_U_U_A_UAC_UUUAGACCAAUU__ ..........((((((...........(((((..(((((......)))))...))))).)))))).....(((((.....................)))))..... ( -6.32 = -7.48 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:04 2006