Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,720,869 – 10,720,979 |
Length | 110 |
Max. P | 0.994321 |
Location | 10,720,869 – 10,720,979 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -35.38 |
Consensus MFE | -20.29 |
Energy contribution | -21.33 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.23 |
Mean z-score | -3.16 |
Structure conservation index | 0.57 |
SVM decision value | 2.47 |
SVM RNA-class probability | 0.994321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10720869 110 + 22224390 GAUCGAUUGAUUGUUAAGAGAUGGAGUGCAAG-CAGUCCUGGCUCAUUGGUUCUUAAUUUGGUUCUAAGAGCCGGAUUC-------AAGGUUGCAUUCCUCUUACAUUCUCAC--AUCAA ....((((((.(((...((((.(((((((((.-((((((.(((((.((((..((......))..)))))))))))))).-------..).))))))))))))))))...))).--))).. ( -39.20) >DroSec_CAF1 9668 112 + 1 GAUCGAUUGUUUGUUAAGAGAUGGAGUGCAAG-CAAUCCUGGCUCAUUGGUUCUUAAAUUGGUCCUUAGAGCCUGAUCA-------UCGAUUGCAUUCCUCUUACAUUCUCACAAAUCGA ..((((((((..(....((((.(((((((((.-..(((..(((((...((..(.......)..))...))))).)))..-------....))))))))))))).....)..)).)))))) ( -33.50) >DroSim_CAF1 9699 112 + 1 GAUCGAUUGUUUGUUAAGAGAUGGAGUGCAAG-CAAUCCUGGCUGAUUGGUUCUUAAAUUGGUCCUAAGAGCCGGAUCA-------UCGAUUGCAUUCCUCUUACAUUCUUACAAAUCGA ..((((((((..(....((((.(((((((((.-..((((.((((..((((..((......))..)))).))))))))..-------....))))))))))))).....)..)).)))))) ( -36.50) >DroEre_CAF1 4954 119 + 1 AUACGAUUGUAUGUCAAGAGAUGGAGAUCAAUGCA-UCCUGGCUCAUUGGUUCUUAAAUUGGUCCUCCGAGCCGGAUCAUUACUUAUAGGUUGCAUUUCUCUCACAUUCCCACAAAUCGA ...(((((...(((...(..(((((((..((((((-.((((((((...((..(.......)..))...)))))(........)....))).))))))..)))).)))..).)))))))). ( -32.80) >DroYak_CAF1 9446 119 + 1 AAACGAUUGUAUGCUGAGAGAUGGAGAACAAUGCAAUCGUGGCUCAUUGGUUUCUAAAUUGGUCCUCAGAGACGGAUCAUUAUUUAUCGAUUGCAUUUCCAUCAC-UUCCCACAAAUCGA ...(((((...((..(((.((((((....((((((((((.((((....))))..(((((((((((........))))))..))))).)))))))))))))))).)-))..))..))))). ( -34.90) >consensus GAUCGAUUGUUUGUUAAGAGAUGGAGUGCAAG_CAAUCCUGGCUCAUUGGUUCUUAAAUUGGUCCUAAGAGCCGGAUCA_______UCGAUUGCAUUCCUCUUACAUUCUCACAAAUCGA ...(((((.........((((.(((((((((.......(((((((...((..((......)).))...))))))).((..........)))))))))))))))...........))))). (-20.29 = -21.33 + 1.04)
Location | 10,720,869 – 10,720,979 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -15.12 |
Energy contribution | -15.88 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.27 |
Mean z-score | -2.06 |
Structure conservation index | 0.51 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10720869 110 - 22224390 UUGAU--GUGAGAAUGUAAGAGGAAUGCAACCUU-------GAAUCCGGCUCUUAGAACCAAAUUAAGAACCAAUGAGCCAGGACUG-CUUGCACUCCAUCUCUUAACAAUCAAUCGAUC (((((--.(((.....((((((((.(((((.(..-------...((((((((.......................))))).)))..)-.))))).)))...)))))....)))))))).. ( -26.60) >DroSec_CAF1 9668 112 - 1 UCGAUUUGUGAGAAUGUAAGAGGAAUGCAAUCGA-------UGAUCAGGCUCUAAGGACCAAUUUAAGAACCAAUGAGCCAGGAUUG-CUUGCACUCCAUCUCUUAACAAACAAUCGAUC ((((((.((.......((((((((.(((((.(((-------(..((.(((((...((..(.......)..))...))))).))))))-.))))).)))...)))))....)))))))).. ( -28.90) >DroSim_CAF1 9699 112 - 1 UCGAUUUGUAAGAAUGUAAGAGGAAUGCAAUCGA-------UGAUCCGGCUCUUAGGACCAAUUUAAGAACCAAUCAGCCAGGAUUG-CUUGCACUCCAUCUCUUAACAAACAAUCGAUC ((((((((((((((((...((((...((((((..-------((((..((.(((((((.....))))))).)).)))).....)))))-)...).)))))).)))).)))...)))))).. ( -27.10) >DroEre_CAF1 4954 119 - 1 UCGAUUUGUGGGAAUGUGAGAGAAAUGCAACCUAUAAGUAAUGAUCCGGCUCGGAGGACCAAUUUAAGAACCAAUGAGCCAGGA-UGCAUUGAUCUCCAUCUCUUGACAUACAAUCGUAU .(((((((((((((((.((((..((((((.(((...(....).....((((((..((..(.......)..))..))))))))).-))))))..))))))).)))...)))).)))))... ( -34.90) >DroYak_CAF1 9446 119 - 1 UCGAUUUGUGGGAA-GUGAUGGAAAUGCAAUCGAUAAAUAAUGAUCCGUCUCUGAGGACCAAUUUAGAAACCAAUGAGCCACGAUUGCAUUGUUCUCCAUCUCUCAGCAUACAAUCGUUU .(((((((((.((.-(.((((((((((((((((........((.(((........))).)).((((........))))...))))))))))....)))))).)))..)))).)))))... ( -32.00) >consensus UCGAUUUGUGAGAAUGUAAGAGGAAUGCAAUCGA_______UGAUCCGGCUCUGAGGACCAAUUUAAGAACCAAUGAGCCAGGAUUG_CUUGCACUCCAUCUCUUAACAAACAAUCGAUC .(((((.((.......(((((((........................(((((...((.............))...))))).(((.((.....)).))).)))))))....)))))))... (-15.12 = -15.88 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:03 2006