Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,708,851 – 10,708,945 |
Length | 94 |
Max. P | 0.712819 |
Location | 10,708,851 – 10,708,945 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.79 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -10.93 |
Energy contribution | -11.17 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -2.38 |
Structure conservation index | 0.50 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10708851 94 - 22224390 UAUAUGGUAAGUGGUAUGUG--GUAUCCUAUGUACUAUGCCAUU--GUAAUUUAUGGUUUGAUCAUUUUGCAUUACCAGUUUAUCGGUAGCAUUCUAU ...(((((..((((((((((--(....))))))))))))))))(--((((...(((((...))))).)))))(((((........)))))........ ( -21.60) >DroSec_CAF1 5431 85 - 1 ---------AGUGGUAUGUG--GUAUUCUAUGUGCUAUGCUAUU--GUAUUUUAUGGUUUGAUCAUUCUGCAUUACCAAUUAAUCGGUAGCAUUCUAU ---------.((((((((((--(....)))))))))))((((((--(.(((...((((.((.........))..))))...))))))))))....... ( -21.60) >DroEre_CAF1 5174 80 - 1 ----------GUGGUAUGUGGGGUAUUCUAUGUGCUAUGC-------UAUUGUAUGGUUUGAUCUUUCUGCGUUACCAGU-CAUCGGUACCAUUCUAU ----------((((((((..(((...((.....(((((((-------....)))))))..))...)))..))).(((...-....))))))))..... ( -18.90) >DroYak_CAF1 5253 83 - 1 ----------GUGGCAUGUG--GUAUUCUAUGUGCUAUGCUAUGUGCUAUUGUAUGGUUUGAUUUUUCUGCAUUACCAGU-GAUCGGUACCAUUCU-- ----------((((((((((--((((..........)))))))))))))).(.(((((((((((...(((......))).-)))))).))))).).-- ( -24.60) >consensus __________GUGGUAUGUG__GUAUUCUAUGUGCUAUGCUAUU__GUAUUGUAUGGUUUGAUCAUUCUGCAUUACCAGU_AAUCGGUACCAUUCUAU ..........((((((((((........))))))))))...............((((((((((....(((......)))...))))).)))))..... (-10.93 = -11.17 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:59 2006