| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,700,017 – 10,700,132 |
| Length | 115 |
| Max. P | 0.546066 |
| Location | 10,700,017 – 10,700,132 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.11 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -18.08 |
| Energy contribution | -19.20 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.546066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10700017 115 + 22224390 UUUAGUGGUUUAUUUAGAGUGCAUCACUGCACGAAAUU-UCGAACUGAAUGAAUC--GAUGACGCUAGACAGAAAUUUCGGUAAAUUCAAAUUGAAAUGGCGGCCAAGAGUGUUGCCA (((((((((((((((((.(((((....)))))((....-))...)))))))))))--......)))))).....((((((((........))))))))(((((((....).)))))). ( -30.10) >DroSec_CAF1 6848 113 + 1 ----GUGGUUUAUUUAGAGUGCAUCACUGCACGAAAUU-UCGAACUGAAUGAAUCGCGAUGACGCUAGACUGAAAUUUCGGUAAAUUCAAAUUGAAAUGGCGGCCAAGCGUGUUGCCA ----..(((((((((((.(((((....)))))((....-))...)))))))))))(((((.(((((.(.(((..((((((((........))))))))..))).).)))))))))).. ( -38.40) >DroEre_CAF1 6878 111 + 1 ----GUGGUUUAUUUAGAGUGCAUCGUUGUACGAAAUU-UGGAUCUGAAUGAAUC--GAUGACGCUAGAAUGAAAUUUCGGUAAAUUCAAAUUGAAAUGGCGGACAAAAAUGUUGCCA ----.((((((((((((((((((....)))))......-....))))))))))))--)................((((((((........))))))))((((.(((....))))))). ( -25.00) >DroYak_CAF1 6933 112 + 1 ----GUGGUUUAUUUAGAGUGCAUCGUUGCACGAAAUUUUGCAGCUGAAUGAAUC--GAUGACGCUAGACUGAAAUUUCGGUAAAUUCAAAUUUAAAUGGCGGCCAAAAAUGUUGCCA ----.((((((((((((..((((..(((......)))..)))).)))))))))))--).(((......(((((....)))))....)))........(((((((.......))))))) ( -29.00) >DroAna_CAF1 7837 100 + 1 ----G-GAGUUAUUUGGAGUGCAUUCCAGA-----------GUACUGAGUUCCUG--AAUGACGCUAUACGAAAUUAUCGGUAAAUUCAAACUGAAAUGGCGGCCGAAAAUGUUGCCA ----.-......((((.(((((((((..((-----------(.......)))..)--)))).))))...))))....(((((........)))))..(((((((.......))))))) ( -22.90) >consensus ____GUGGUUUAUUUAGAGUGCAUCACUGCACGAAAUU_UCGAACUGAAUGAAUC__GAUGACGCUAGACUGAAAUUUCGGUAAAUUCAAAUUGAAAUGGCGGCCAAAAAUGUUGCCA ......(((((((((((.(((((....)))))............)))))))))))...................((((((((........))))))))((((((.......)))))). (-18.08 = -19.20 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:58 2006