Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,694,710 – 10,694,806 |
Length | 96 |
Max. P | 0.577039 |
Location | 10,694,710 – 10,694,806 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.58 |
Mean single sequence MFE | -44.45 |
Consensus MFE | -26.58 |
Energy contribution | -28.37 |
Covariance contribution | 1.79 |
Combinations/Pair | 1.40 |
Mean z-score | -1.61 |
Structure conservation index | 0.60 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10694710 96 - 22224390 CCCGCCGGCUAAAGGUGCGUUGGCAAUGGGCGCACUGUAGACGUGCGGUCUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG .((((((.(((..((((((((.......)))))))).))).)).))))(((.((.(..((((((((((....))).)))))))..).))))).... ( -46.50) >DroSec_CAF1 1711 96 - 1 CCCGCCGGCUAAAGGUGCGUUGGCAAUGGGCGCACUGUAGACGUGCGGUCUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG .((((((.(((..((((((((.......)))))))).))).)).))))(((.((.(..((((((((((....))).)))))))..).))))).... ( -46.50) >DroEre_CAF1 1735 96 - 1 CCCGCCGGCUAAAGGUGCGCUGGCAAUGUGCGCACUGCAGUCGUGCGGUCUGCUCGUGACUGCGCGCCAAAUGGCUGCGAAGCUGUCGGAGAUGCG .(((.(((((...(((((((.........)))))))(((...((((((((.......))))))))(((....))))))..))))).)))....... ( -44.20) >DroYak_CAF1 1765 96 - 1 CCCGCCGGCUAAAAGUGCGCUGACAAUGGGCGCACUGAAGUCGUGCGGUUUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG .(((((((((...((((((((.......))))))))..))))).))))....((((..((((((((((....))).)))))))..)..)))..... ( -51.40) >DroAna_CAF1 1655 96 - 1 CGCUCCGGGUGAAGGUCCGCGGGCAGUGGCCACACUGGAGACGAGCGGUCUGAUCGUGGCUCUUUGCCAGGUGGAUGCGCAGCUGCCGGAGAUGGG (((((((((((...((((((.(((((.((((((.....((((.....))))....))))))..)))))..)))))).))).....)))))).)).. ( -41.50) >DroPer_CAF1 1540 96 - 1 CCCUGCGGGUGAAGGCUGAUUGGCAGUGGGGACACUGGAGACGCUCAGUUUGGUUAUGACACCGUGCUAGAUGCGCUCUGAGCUGACGCAGAUGCG ..(((((......((((.(....(((((....)))))(((.((((((((.((((......)))).))).)).))))))).))))..)))))..... ( -36.60) >consensus CCCGCCGGCUAAAGGUGCGCUGGCAAUGGGCGCACUGGAGACGUGCGGUCUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG ....(((((....(((((((.(.((.((((((.(((((......))))).)))))))).).)))))))....((((....)))))))))....... (-26.58 = -28.37 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:57 2006