Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,674,003 – 10,674,104 |
Length | 101 |
Max. P | 0.648084 |
Location | 10,674,003 – 10,674,104 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.87 |
Mean single sequence MFE | -40.10 |
Consensus MFE | -24.46 |
Energy contribution | -24.52 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.19 |
Mean z-score | -2.02 |
Structure conservation index | 0.61 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10674003 101 + 22224390 ----CAUGUCCCUAUCCUUUC-------ACUCUACCCACUAUCUUGCACCGACAAUCUUGGGCAGGACGAUCGG------GAUCGCCUGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG ----..((((.((..((((((-------((((((.......((((((.((((.....)))))))))).((((((------(....))))))).))))).)))))))....)).)))). ( -37.80) >DroSec_CAF1 1442 101 + 1 ----CAUGUCCCUAUCCUUUC-------ACUCUCCCCACUAUCUUGCACCGUCAAUCUUGGGCAGGACGAUCGG------GAUCGCCCGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG ----..((((.((..((((((-------(.(((((......((((((.(((.......))))))))).((((((------(....)))))))..))))))))))))....)).)))). ( -41.50) >DroSim_CAF1 5672 101 + 1 ----CAUGUCCCUAUCCUUUC-------ACUCUCCCCACUAUCUUGCAGCGUCAAUCUUGGGCAGGACGAUCGG------GAUCGCCCGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG ----..((((.((..((((((-------(.(((((......((((((..((.......)).)))))).((((((------(....)))))))..))))))))))))....)).)))). ( -37.90) >DroYak_CAF1 5487 118 + 1 CAGACAUGUCCCCAUUCUUCCCCAUUUCUUUUGCCCUGCUAUCUGGCACCAUCAAUCUUGGGCAGGACGAUCAGGAUCAGGUUGGCCUGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG ..(((((.(..((((.(((.......((((((((((((((....))))...........)))))))).)).((((((((((....))))))))))))))))).).)))))........ ( -43.20) >consensus ____CAUGUCCCUAUCCUUUC_______ACUCUCCCCACUAUCUUGCACCGUCAAUCUUGGGCAGGACGAUCGG______GAUCGCCCGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG ......((((.((..((((((.........(((((......((((((.(((.......))))))))).((((((............))))))..))))).))))))....)).)))). (-24.46 = -24.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:52 2006