Locus 4038

Sequence ID X_DroMel_CAF1
Location 10,672,793 – 10,672,895
Length 102
Max. P 0.634898
window6638

overview

Window 8

Location 10,672,793 – 10,672,895
Length 102
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 67.42
Mean single sequence MFE -32.69
Consensus MFE -14.65
Energy contribution -17.23
Covariance contribution 2.59
Combinations/Pair 1.08
Mean z-score -2.11
Structure conservation index 0.45
SVM decision value 0.21
SVM RNA-class probability 0.634898
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10672793 102 + 22224390
UGAUUGA---UAGAUUAACAUUCUAUUGGACAAAGCAUAACUCUUUGUUAUUUUUUUCGAGUGU------------ACUUG---CUGCAGAAUCUCCUGUGCAAUCCGAUCUGUGUCGGU
.(((..(---((((((.((((((.....(((((((.......))))))).........))))))------------..(((---(.((((......))))))))...))))))))))... ( -22.74)
>DroEre_CAF1 3151 113 + 1
UGGGAUA---UAAAUGUAUAUAUUCACGGAUUGCGCAUUACGCUUCGUUAUUUUU-CUGAGUGUGUAUCUCUGCACACUCG---AUGCGGGAUCUCCUGUGCAAUCCGAUCUGUGUCGGU
..(((((---((......))))))).(((((((((((...(((.(((........-).(((((((((....))))))))))---).)))((....)))))))))))))............ ( -40.70)
>DroYak_CAF1 4231 118 + 1
UGAGAUGGUUUUAGUUGAGAU-CUCAUGGUUUGAGCAAUACGCUGCGUUAUUUUU-CCAAGUGUGUAUCUCUGCACACAGAGAUCUGCUGGAUCUGCUGUGCAAUCCGAUCUGUGUCGGU
.(((((.......(((.((((-(....))))).))).(((((((...........-...))))))))))))((((((...(((((.....)))))..))))))..(((((....))))). ( -34.64)
>consensus
UGAGAUA___UAAAUUAACAU_CUCAUGGAUUGAGCAUUACGCUUCGUUAUUUUU_CCGAGUGUGUAUCUCUGCACACUCG___CUGCAGGAUCUCCUGUGCAAUCCGAUCUGUGUCGGU
...........................(((((.((((..((.....))..........(((((((((....))))))))).....)))).)))))..........(((((....))))). (-14.65 = -17.23 +   2.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:51 2006