Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,672,384 – 10,672,519 |
Length | 135 |
Max. P | 0.914040 |
Location | 10,672,384 – 10,672,493 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -38.63 |
Consensus MFE | -21.24 |
Energy contribution | -23.47 |
Covariance contribution | 2.23 |
Combinations/Pair | 1.12 |
Mean z-score | -2.06 |
Structure conservation index | 0.55 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10672384 109 + 22224390 GAUUGCAUUUCA-AGGGGCAGCGAGAAGUUCGGUCGCGUGGCAA------CGGCAACCCCUGCAGCCAA--CUGCAACUUCCACGUUGCAUCGCUGCAACUCGGCCCUGUUUGCAGCC ..(((((.....-.(((((..((((......(((.((.((....------)))).)))..((((((...--.((((((......))))))..)))))).)))))))))...))))).. ( -42.60) >DroEre_CAF1 2709 112 + 1 GAUUGCAUUUCAAAGGGGCAGCGGGAUGUUCGGUCGCGUGGCAAUGGCAAUGGCAA-CCCUCCAGCCAU----GCAACUUCCACGUUGCAUCGUUGCAUCUCUGCCUUGU-UGCAGCC ..(((((.......(((((((..((((((.(((((((((((.....(((.((((..-.......)))))----)).....))))).)).))))..)))))))))))))..-))))).. ( -41.70) >DroYak_CAF1 3733 90 + 1 GAUUGCAUUUCA--------------------GUCGCGUGGCAA------UGGCAA-CCCUCCAGCCAUGCAUGCAACUGCCACGUUGCAUCGUUGCAUCUCUGCCUUGC-UGCAGCC (((((.....))--------------------)))(((((((..------(((...-....))))))))))(((((((......))))))).((((((.(........).-)))))). ( -31.60) >consensus GAUUGCAUUUCA_AGGGGCAGCG_GA_GUUCGGUCGCGUGGCAA______UGGCAA_CCCUCCAGCCAU___UGCAACUUCCACGUUGCAUCGUUGCAUCUCUGCCUUGU_UGCAGCC ..(((((...((...((((.((((.........))))(..((.........(((..........)))......(((((......)))))...))..)......))))))..))))).. (-21.24 = -23.47 + 2.23)
Location | 10,672,423 – 10,672,519 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.30 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -18.25 |
Energy contribution | -18.03 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.70 |
Structure conservation index | 0.67 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10672423 96 + 22224390 GCAA------CGGCAACCCCUGCAGCCAA--CUGCAACUUCCACGUUGCAUCGCUGCAACUCGGCCCUGUUUGCAGCCUCCUCUUG--UCUUUCCCAUCCGUGUGC----------- ((((------(((.......((((((...--.((((((......))))))..))))))....(((..((....)))))........--..........)))).)))----------- ( -26.50) >DroEre_CAF1 2749 98 + 1 GCAAUGGCAAUGGCAA-CCCUCCAGCCAU----GCAACUUCCACGUUGCAUCGUUGCAUCUCUGCCUUGU-UGCAGCCUCCUCUUG--UCCUCCGCGCCCAUGUGC----------- (((...((((.((((.-.....((((.((----(((((......))))))).))))......))))))))-)))............--......((((....))))----------- ( -26.90) >DroYak_CAF1 3753 109 + 1 GCAA------UGGCAA-CCCUCCAGCCAUGCAUGCAACUGCCACGUUGCAUCGUUGCAUCUCUGCCUUGC-UGCAGCCUCCUCUUGUGUCUUCCCCACCCGUGUGCUCAUGUGCCUC (((.------((((..-.......)))))))..(((...(((((((((((.((..(((....)))..)).-))))))........(((.......)))..))).)).....)))... ( -28.60) >consensus GCAA______UGGCAA_CCCUCCAGCCAU___UGCAACUUCCACGUUGCAUCGUUGCAUCUCUGCCUUGU_UGCAGCCUCCUCUUG__UCUUCCCCACCCGUGUGC___________ (((........(((..........)))......(((((......)))))...((((((...(......)..))))))..........................)))........... (-18.25 = -18.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:50 2006