Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,672,024 – 10,672,140 |
Length | 116 |
Max. P | 0.773952 |
Location | 10,672,024 – 10,672,140 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 84.68 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -25.03 |
Energy contribution | -26.92 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.03 |
Mean z-score | -2.10 |
Structure conservation index | 0.77 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10672024 116 + 22224390 CGAUCCUUGAUCUCGUCGCCAGCUGCACCUGCAGCAGAUCGUUGCCUGUGCUUGUUGGUUUUUCGGCUCACUCCACAGUUUCGAGACUGGCCAUUUCUCACUCGCUUGUUGGCCAA .((((...))))..(((((((((.((((..(((((.....)))))..))))..))))))...((((..(........)..)))))))((((((................)))))). ( -36.19) >DroEre_CAF1 2345 112 + 1 CGAUCCUUGAUCUCGUCGCCAGCUGCACCUGCAGCAGAUCGCUGCUUGUGCUUGUUGGUUUUUCGGCUCACUCCAC--UUUC--GACUGACCAUUUCUCACUCGCUUGUUGGCCAA .((((...)))).....((((((.((((..(((((.....)))))..))))..)))))).....((((.((.....--...(--((.(((.......))).)))...)).)))).. ( -34.30) >DroYak_CAF1 3392 95 + 1 CGAUCCUUGAUCUCGUCGCCAGCUGCACCUG-------------------CUUGUUGGUUUUGCGGCUCACUCCAC--UUUCGCGACUGGCCAUUUCUCACUCGCUUGUUGGCCAA .((((...))))..(((((.(((((((...(-------------------((....)))..)))))))........--....)))))((((((................)))))). ( -27.11) >consensus CGAUCCUUGAUCUCGUCGCCAGCUGCACCUGCAGCAGAUCG_UGC_UGUGCUUGUUGGUUUUUCGGCUCACUCCAC__UUUCG_GACUGGCCAUUUCUCACUCGCUUGUUGGCCAA .((((...))))..(((((((((.((((..(((((.....)))))..))))..)))))).....((......))..........)))((((((................)))))). (-25.03 = -26.92 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:48 2006