Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,670,543 – 10,670,650 |
Length | 107 |
Max. P | 0.999735 |
Location | 10,670,543 – 10,670,650 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.44 |
Mean single sequence MFE | -40.17 |
Consensus MFE | -29.11 |
Energy contribution | -29.33 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -2.86 |
Structure conservation index | 0.72 |
SVM decision value | 3.97 |
SVM RNA-class probability | 0.999735 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10670543 107 + 22224390 CCCCCAGCGGCAACUGCGACGCAUUUUUGUGUGUGCGUCCUGUGCGUUGCCAUGCUGCGAUUU-----------UCCAUUUCGAUUUGGGAUGGUUGGGAUCGCAUU--GGCUUGGAUUC ..((.(((((((((.(((((((((........)))))))....))))))))....((((((((-----------.((((..(.....)..))))...))))))))..--.))).)).... ( -43.80) >DroEre_CAF1 835 89 + 1 CCC-CUGAGGCAACUGCGACGCAUUUUUGUGUGUGCGUCCUGUGCGUUGCCAUGCUGCGAUUUCC------------AUUUCGAUUCGGGAUGGAUGGGUUC------------------ .((-(...((((((.(((((((((........)))))))....))))))))...........(((------------((..((...))..))))).)))...------------------ ( -34.80) >DroYak_CAF1 1854 119 + 1 CCC-CUGAGGCAACUGCGACGCACUUUUGUGUGUGCGUCCUGUGCGUUGCCAUGCUGCGAUUUCCAUUUCCAUUUCCAUUUCGAUUUGGGAUGGCUGGGAUCGUAUUCUCGCUUAGAUUC ...-((((((((((.(((((((((........)))))))....))))))))....(((((((.(((...(((((.(((........)))))))).)))))))))).......)))).... ( -41.90) >consensus CCC_CUGAGGCAACUGCGACGCAUUUUUGUGUGUGCGUCCUGUGCGUUGCCAUGCUGCGAUUUCC_________UCCAUUUCGAUUUGGGAUGGAUGGGAUCG_AUU___GCUU_GAUUC (((.....((((((.(((((((((........)))))))....))))))))........................((((..((...))..))))..)))..................... (-29.11 = -29.33 + 0.23)
Location | 10,670,543 – 10,670,650 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.44 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -21.67 |
Energy contribution | -22.33 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.40 |
Structure conservation index | 0.67 |
SVM decision value | 2.67 |
SVM RNA-class probability | 0.996250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10670543 107 - 22224390 GAAUCCAAGCC--AAUGCGAUCCCAACCAUCCCAAAUCGAAAUGGA-----------AAAUCGCAGCAUGGCAACGCACAGGACGCACACACAAAAAUGCGUCGCAGUUGCCGCUGGGGG ...(((.(((.--..((((((.....((((..(.....)..)))).-----------..))))))....((((((((....((((((..........)))))))).))))))))).))). ( -33.40) >DroEre_CAF1 835 89 - 1 ------------------GAACCCAUCCAUCCCGAAUCGAAAU------------GGAAAUCGCAGCAUGGCAACGCACAGGACGCACACACAAAAAUGCGUCGCAGUUGCCUCAG-GGG ------------------...(((.(((((..((...))..))------------)))...........((((((((....((((((..........)))))))).))))))...)-)). ( -28.10) >DroYak_CAF1 1854 119 - 1 GAAUCUAAGCGAGAAUACGAUCCCAGCCAUCCCAAAUCGAAAUGGAAAUGGAAAUGGAAAUCGCAGCAUGGCAACGCACAGGACGCACACACAAAAGUGCGUCGCAGUUGCCUCAG-GGG ...(((..((((((......))(((.((((.(((........)))..))))...)))...)))).....((((((((....(((((((........))))))))).))))))..))-).. ( -35.70) >consensus GAAUC_AAGC___AAU_CGAUCCCAACCAUCCCAAAUCGAAAUGGA_________GGAAAUCGCAGCAUGGCAACGCACAGGACGCACACACAAAAAUGCGUCGCAGUUGCCUCAG_GGG .....................(((..((((..(.....)..))))........................((((((((....((((((..........)))))))).)))))).....))) (-21.67 = -22.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:48 2006