Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,657,741 – 10,657,837 |
Length | 96 |
Max. P | 0.728208 |
Location | 10,657,741 – 10,657,837 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 91.61 |
Mean single sequence MFE | -31.23 |
Consensus MFE | -29.70 |
Energy contribution | -30.37 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.95 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10657741 96 + 22224390 AGGGCCAUCGCAUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGA----------- ...((((..((((((((......))))))))....))))(((((......(((((((...(....((((....)))).).))))))).)))))...----------- ( -33.10) >DroEre_CAF1 15389 96 + 1 AGGACCAUCGCUUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGA----------- ......(((((.(((((......))))).(((....))))))))..((((((...(((..(.((((((.......)))))).)..)))..))))))----------- ( -25.30) >DroYak_CAF1 16104 107 + 1 AGGGCCAUCGCAUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGAUCGUAGAUCUC ...((((..((((((((......))))))))....))))(((((......(((((((...(....((((....)))).).))))))).)))))(((((...))))). ( -35.30) >consensus AGGGCCAUCGCAUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGA___________ ...((((..((((((((......))))))))....)))).......((((((...(((..(.((((((.......)))))).)..)))..))))))........... (-29.70 = -30.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:44 2006