Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,642,071 – 10,642,174 |
Length | 103 |
Max. P | 0.944257 |
Location | 10,642,071 – 10,642,174 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.54 |
Mean single sequence MFE | -13.78 |
Consensus MFE | -10.50 |
Energy contribution | -9.83 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.13 |
Mean z-score | -2.02 |
Structure conservation index | 0.76 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10642071 103 - 22224390 AAAAAUAGCCAAGGCAGGGUUUUCUACUGUUGAUACUACCUCCACAGCACACCCAUAAGAUUCAAU-------ACCCCAAGACCCAAAAGCACCCACCACAA--------UUUACAAC .......((....)).(((((((....((((((............................)))))-------)....))))))).................--------........ ( -13.69) >DroSec_CAF1 23465 118 - 1 AACAAUAGCCAAGGCAGGGUUUUCUACUGUUAAUACUACCUCCAUAGCACACCCAUAAGUUUCAAUACCCAAUACCCCAAGACCCAAAAGCACCCAGCACAAUUUAACAAUUUACAAC .......((....)).(((((((....(((((............))))).........((......))..........)))))))....((.....)).................... ( -11.40) >DroEre_CAF1 24340 98 - 1 AACAAUAGCCAAGGCAGGGUUUUCUACUGUUGAUACUACCUCCACAACACACCAAUAAGUUUCAAU-------ACCACAAGACCCAAA-------------AUUUAACAAUUUACAAC .......((....)).(((((((....((((((.(((....................))).)))))-------)....)))))))...-------------................. ( -16.25) >consensus AACAAUAGCCAAGGCAGGGUUUUCUACUGUUGAUACUACCUCCACAGCACACCCAUAAGUUUCAAU_______ACCCCAAGACCCAAAAGCACCCA_CACAAUUUAACAAUUUACAAC .......((....)).(((((((....(((((............)))))(........)...................)))))))................................. (-10.50 = -9.83 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:31 2006