Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,635,001 – 10,635,102 |
Length | 101 |
Max. P | 0.997227 |
Location | 10,635,001 – 10,635,102 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.43 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -19.42 |
Energy contribution | -19.68 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -2.53 |
Structure conservation index | 0.92 |
SVM decision value | 2.82 |
SVM RNA-class probability | 0.997227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10635001 101 - 22224390 CAUUUAAUCAGACCUCCCCCCUUCUCAC-UUCUCCAGCGCC-UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC-CGCUGGGCACCC-----------AACUCCCCU----- ............................-...(((((((..-((((((.....(((((.......)))))....))))))..-))))))).....-----------.........----- ( -20.50) >DroEre_CAF1 17361 107 - 1 CAUUUAAUCAG----CCCCCCUUCUCGU-CCACCCAGCGCC-UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC-CGCUGGGCACCCC---AAAC---AAAUCCCCCCCCCU ...........----.............-...(((((((..-((((((.....(((((.......)))))....))))))..-)))))))......---....---.............. ( -23.10) >DroYak_CAF1 16987 97 - 1 CAUUUAAUCAG----CCCCCCUUCUCGU-CCAUCCAGCGCC-UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC-CGCUGGUCACCC-----------AACUCCCCC----- ...........----.............-....((((((..-((((((.....(((((.......)))))....))))))..-))))))......-----------.........----- ( -19.60) >DroAna_CAF1 24907 111 - 1 CAUCCAUUCAU----CCCCCCUUCUUUUGCCAUCCAGCACUUUGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUGGCGCUGGACACACCCCCACACCCCCACUCCCCC----- ...........----.................((((((.((.((((((.....(((((.......)))))....)))))).)).)))))).........................----- ( -21.60) >consensus CAUUUAAUCAG____CCCCCCUUCUCGU_CCAUCCAGCGCC_UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC_CGCUGGGCACCC___________AACUCCCCC_____ ................................(((((((...((((((.....(((((.......)))))....))))))...))))))).............................. (-19.42 = -19.68 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:24 2006