Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,634,650 – 10,634,768 |
Length | 118 |
Max. P | 0.992895 |
Location | 10,634,650 – 10,634,768 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.79 |
Mean single sequence MFE | -26.94 |
Consensus MFE | -22.86 |
Energy contribution | -23.30 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.36 |
Structure conservation index | 0.85 |
SVM decision value | 2.36 |
SVM RNA-class probability | 0.992895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10634650 118 + 22224390 UAAUGUAGAUACAAUGUACAGUGUAGAUACAUCUGGUGUCGUCACAUCAUCCUCAU--GUAGAUUAUGUGUAGAUUAAAUGAACUUAACAGUAAAAUGUAGACGACGCAAAAAAAAGCUC ..(((((..((((........))))..)))))...((((((((.(((.(((..(((--(((...))))))..)))...)))......(((......))).))))))))............ ( -25.70) >DroSec_CAF1 16365 118 + 1 UAAUGUAGAUACAAUGUACAGUGUAGAUACAUCUGGUGUCGUCACAUCAUCCUCAU--GUAGAUUAUGUGUAGAUUAAAUGAACUUAACAGUAAAAUGUAGACGACGCAAAAAAAAGCUC ..(((((..((((........))))..)))))...((((((((.(((.(((..(((--(((...))))))..)))...)))......(((......))).))))))))............ ( -25.70) >DroEre_CAF1 17015 118 + 1 UAAUGUAGAUACAAUGUACAAUGUAGAUACAUCCUGUGUCGUCACAUCAUCCUCAU--GUAGAUUAUGUGUAGAUUAAAUGAACUUAACAGUAAAAUGUAGACGACGCAAAAAAAAGCUC ..(((((..((((........))))..)))))..(((((((((.(((.(((..(((--(((...))))))..)))...)))......(((......))).)))))))))........... ( -26.50) >DroYak_CAF1 16627 118 + 1 UAAUGUAGAUACAAUGUACAAUGUAGAUACAUCCUGUGUCGUCACAUCAUUCUCAU--GUAGAUUAUGUGUAGAUUAAAUGAACUUAACAGUAAAAUGUAGACGACGCAAAAAAAAGCUC ..(((((..((((........))))..)))))..(((((((((...((((((((((--(((...)))))).)))....)))).....(((......))).)))))))))........... ( -26.80) >DroAna_CAF1 24529 120 + 1 UAAUGUAGAUACAAUGUACAAUGUAGAUACAUCCUGUGUCGUCACAUCAUCCUCAUGUGUAGAUUAUGUGUAGAUUAAAUGACCUUACGUGUAAAAUGUAGACGACGCAAAAAAAAGCUA ..(((((..((((........))))..)))))..(((((((((.(((.(((..((((((.....))))))..)))...)))....(((((.....))))))))))))))........... ( -30.00) >consensus UAAUGUAGAUACAAUGUACAAUGUAGAUACAUCCUGUGUCGUCACAUCAUCCUCAU__GUAGAUUAUGUGUAGAUUAAAUGAACUUAACAGUAAAAUGUAGACGACGCAAAAAAAAGCUC ..(((((..((((........))))..)))))...((((((((((((.(((..(....)..))).))))..................(((......))).))))))))............ (-22.86 = -23.30 + 0.44)
Location | 10,634,650 – 10,634,768 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.79 |
Mean single sequence MFE | -24.56 |
Consensus MFE | -22.90 |
Energy contribution | -23.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.93 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10634650 118 - 22224390 GAGCUUUUUUUUGCGUCGUCUACAUUUUACUGUUAAGUUCAUUUAAUCUACACAUAAUCUAC--AUGAGGAUGAUGUGACGACACCAGAUGUAUCUACACUGUACAUUGUAUCUACAUUA ..((........))((((((.((((...(((....)))..............(((..((...--..))..)))))))))))))....((((((..((((........))))..)))))). ( -23.90) >DroSec_CAF1 16365 118 - 1 GAGCUUUUUUUUGCGUCGUCUACAUUUUACUGUUAAGUUCAUUUAAUCUACACAUAAUCUAC--AUGAGGAUGAUGUGACGACACCAGAUGUAUCUACACUGUACAUUGUAUCUACAUUA ..((........))((((((.((((...(((....)))..............(((..((...--..))..)))))))))))))....((((((..((((........))))..)))))). ( -23.90) >DroEre_CAF1 17015 118 - 1 GAGCUUUUUUUUGCGUCGUCUACAUUUUACUGUUAAGUUCAUUUAAUCUACACAUAAUCUAC--AUGAGGAUGAUGUGACGACACAGGAUGUAUCUACAUUGUACAUUGUAUCUACAUUA ..((........))((((((.((((...(((....)))..............(((..((...--..))..)))))))))))))....((((((..((((........))))..)))))). ( -24.90) >DroYak_CAF1 16627 118 - 1 GAGCUUUUUUUUGCGUCGUCUACAUUUUACUGUUAAGUUCAUUUAAUCUACACAUAAUCUAC--AUGAGAAUGAUGUGACGACACAGGAUGUAUCUACAUUGUACAUUGUAUCUACAUUA ..((........))((((((.((((...(((....)))..............(((..((...--..))..)))))))))))))....((((((..((((........))))..)))))). ( -23.90) >DroAna_CAF1 24529 120 - 1 UAGCUUUUUUUUGCGUCGUCUACAUUUUACACGUAAGGUCAUUUAAUCUACACAUAAUCUACACAUGAGGAUGAUGUGACGACACAGGAUGUAUCUACAUUGUACAUUGUAUCUACAUUA ..((........))((((((.((((.......(((.(((......)))))).(((..((.......))..)))))))))))))....((((((..((((........))))..)))))). ( -26.20) >consensus GAGCUUUUUUUUGCGUCGUCUACAUUUUACUGUUAAGUUCAUUUAAUCUACACAUAAUCUAC__AUGAGGAUGAUGUGACGACACAGGAUGUAUCUACAUUGUACAUUGUAUCUACAUUA ..((........))((((((.((((......((((((....)))))).....(((..((.......))..)))))))))))))....((((((..((((........))))..)))))). (-22.90 = -23.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:23 2006