Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,629,786 – 10,629,881 |
Length | 95 |
Max. P | 0.989429 |
Location | 10,629,786 – 10,629,881 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.24 |
Mean single sequence MFE | -35.74 |
Consensus MFE | -25.60 |
Energy contribution | -26.92 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.14 |
Mean z-score | -2.93 |
Structure conservation index | 0.72 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10629786 95 + 22224390 G-----------UUCUC--UCUCUAUAUGCAUAUGCAGAGUAUGCGAAAUUCGGAGAGAGCCGAAAAAAAACUAGCGGUUGGCAACAGCACGUGUGCGAGCGAGAGAG .-----------..(((--((((....(((....)))..(((((((...(((((......)))))............((((....)))).)))))))....))))))) ( -32.90) >DroSec_CAF1 11395 97 + 1 G-----------UUCUCUCUCUCUAUAUGCAUAUGCAGAGUAUGCGAAAUUCGAAGAGAGCCGAAAGAAAACUAGCGGUUGGCAACAGCACGUGUGCGAGAGAGAGAG .-----------.((((((((((....(((....)))..(((((((...((((........))))............((((....)))).))))))))))))))))). ( -36.90) >DroSim_CAF1 11458 97 + 1 G-----------UUCUCUCUCUCUAUAUGCAUAUGCAGAGUAUGCGAAAUUCGAAGAGAGCCGAAAGAAAACUAGCGGUUGGCAACAGCACGUGUGCGAGCGAGAGAG .-----------.((((((.(((....(((....)))..(((((((...((((........))))............((((....)))).)))))))))).)))))). ( -32.40) >DroEre_CAF1 11199 100 + 1 GC-GCU----CGUUCCCUCCCUCUCUAUGCAUAUGCA-AGUGUGCAAAAUUCGGA--GAGCCGAGAACCAACUAGCGGUUGGCAACAGCACAUCUGCGAGCGAGAGAG ..-...----..........((((((.(((...((((-..(((((....(((((.--...)))))..(((((.....))))).....)))))..)))).))))))))) ( -34.70) >DroYak_CAF1 12036 108 + 1 GCCGCUCUCUCUCUCUCCCCCUUUCUAUGCAAAUGCAGAGUGUGCGAAAUUCGGAGAGAGCCGACCACCAACUGGCAGUUGGCAACAGCACGUGUGCGAGCGAGAGAG ....((((((((((((((.........(((....)))((((.......)))))))))))((((((..((....))..))))))....((.((....)).))))))))) ( -41.80) >consensus G___________UUCUCUCUCUCUAUAUGCAUAUGCAGAGUAUGCGAAAUUCGGAGAGAGCCGAAAAAAAACUAGCGGUUGGCAACAGCACGUGUGCGAGCGAGAGAG ............(((((((.(((....(((....)))..(((((((...(((((......)))))............((((....)))).)))))))))).))))))) (-25.60 = -26.92 + 1.32)
Location | 10,629,786 – 10,629,881 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 83.24 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -21.56 |
Energy contribution | -21.40 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.18 |
Mean z-score | -1.83 |
Structure conservation index | 0.71 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10629786 95 - 22224390 CUCUCUCGCUCGCACACGUGCUGUUGCCAACCGCUAGUUUUUUUUCGGCUCUCUCCGAAUUUCGCAUACUCUGCAUAUGCAUAUAGAGA--GAGAA-----------C (((((((((..(((....)))....)).....((.........(((((......)))))....(((.....)))....)).....))))--)))..-----------. ( -24.10) >DroSec_CAF1 11395 97 - 1 CUCUCUCUCUCGCACACGUGCUGUUGCCAACCGCUAGUUUUCUUUCGGCUCUCUUCGAAUUUCGCAUACUCUGCAUAUGCAUAUAGAGAGAGAGAA-----------C .(((((((((((((....)))...(((...(((..((....))..)))...............(((.....)))....)))....)))))))))).-----------. ( -28.70) >DroSim_CAF1 11458 97 - 1 CUCUCUCGCUCGCACACGUGCUGUUGCCAACCGCUAGUUUUCUUUCGGCUCUCUUCGAAUUUCGCAUACUCUGCAUAUGCAUAUAGAGAGAGAGAA-----------C .((((((.((((((....)))...(((...(((..((....))..)))...............(((.....)))....)))....))).)))))).-----------. ( -24.30) >DroEre_CAF1 11199 100 - 1 CUCUCUCGCUCGCAGAUGUGCUGUUGCCAACCGCUAGUUGGUUCUCGGCUC--UCCGAAUUUUGCACACU-UGCAUAUGCAUAGAGAGGGAGGGAACG----AGC-GC (((((((.(((((((.(((((....((((((.....))))))..((((...--.)))).....))))).)-))).((....))))).)))))))....----...-.. ( -33.70) >DroYak_CAF1 12036 108 - 1 CUCUCUCGCUCGCACACGUGCUGUUGCCAACUGCCAGUUGGUGGUCGGCUCUCUCCGAAUUUCGCACACUCUGCAUUUGCAUAGAAAGGGGGAGAGAGAGAGAGCGGC (((((((((.((....)).))....(((.((..((....))..)).)))((((((((.....).....((.(((....))).))......)))))))))))))).... ( -41.20) >consensus CUCUCUCGCUCGCACACGUGCUGUUGCCAACCGCUAGUUUUUUUUCGGCUCUCUCCGAAUUUCGCAUACUCUGCAUAUGCAUAUAGAGAGAGAGAA___________C .((((((.(((......((((....((.....))..........((((......)))).....))))....(((....)))....))).))))))............. (-21.56 = -21.40 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:14 2006