Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,627,737 – 10,627,857 |
Length | 120 |
Max. P | 0.892112 |
Location | 10,627,737 – 10,627,857 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.11 |
Mean single sequence MFE | -38.32 |
Consensus MFE | -33.74 |
Energy contribution | -33.29 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.72 |
Structure conservation index | 0.88 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10627737 120 - 22224390 AUUUCGCUGCCGGAGGCAUCUCCGCAGCUGUCUCCAAGACUGCCGUCGCCCCCAUUGAGCGUGUGAAACUGCUCCUGCAGGUUCAGCACAUCUCGAAACAAAUCAGCCCCGACAAGCAGU .....(((((.((((....)))))))))..........(((((.((((........(((.(((((((.((((....)))).)))).)))..)))((......)).....))))..))))) ( -39.30) >DroVir_CAF1 24273 120 - 1 ACUUCGCUGCCGGUGGCAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUGCUGCAGGUUCAGCACAUCUCGAAACAAAUCACCCCCGAUCAGCAAU .....((((.(((.((......(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..))))).........)).)))..))))... ( -36.90) >DroGri_CAF1 17481 120 - 1 ACUUCGCUGCCGGUGGUAUUUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUCCUGCAGGUUCAGCACAUCUCGAAACAAAUCUCGCCCGAUCAGCAAU .....((((..((((..((((.(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..)))))...))))..))))....))))... ( -36.60) >DroWil_CAF1 14600 120 - 1 AUUUCGCUGCCGGUGGUAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCCCCAAUUGAGCGUGUGAAGCUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCAGCCCCGACAAGCAGU .....((((((((.(((.....(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..))))).........))))))....))))) ( -37.90) >DroMoj_CAF1 11790 120 - 1 ACUUCGCUGCCGGAGGUAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCUCCCCCGAUCAGCAAU .....(((((.((((....))))))))).........(((....)))((.....(((((.(((((((.((((....)))).)))).)))..))))).....(((......)))..))... ( -37.60) >DroPer_CAF1 9926 120 - 1 ACUUCGCUGCCGGAGGCAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCCCCCAUCGAGCGUGUGAAGCUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCAGCCCCGAUAAGCAAU .....(((..(((.(((.....(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..))))).........))))))...)))... ( -41.60) >consensus ACUUCGCUGCCGGAGGCAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCACCCCCGAUAAGCAAU .....(((((.((........))))))).(((.....)))(((.((((......(((((.(((((((.((((....)))).)))).)))..))))).............))))..))).. (-33.74 = -33.29 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:12 2006