Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,626,005 – 10,626,105 |
Length | 100 |
Max. P | 0.625416 |
Location | 10,626,005 – 10,626,105 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 84.80 |
Mean single sequence MFE | -20.30 |
Consensus MFE | -15.57 |
Energy contribution | -15.07 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.56 |
Structure conservation index | 0.77 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10626005 100 - 22224390 UAUUUGUAAUUCAAAAAUUAUAUUAGCAUACUUACACAGACCAUUUG--UGCAGUCAACCAAUUGGUCGUCUCAAUU-----UAAUCUUCGGCAGUUCGAAGCUAAA ....(((((((....)))))))(((((...........(((((.(((--.(.......)))).))))).........-----.....(((((....)))))))))). ( -17.70) >DroSec_CAF1 7671 102 - 1 UAUUUGGAAUUCAAAAAAUAUAUUAGCAUACUUACACAGACCAUUUGUGUGCAGUCAACCAAUUGGUCGACUCAAUU-----UCAUCUUCGGCAGUUCGAAGCUAAA ....(((((((..............((((((...............))))))((((.(((....))).)))).))))-----))).((((((....))))))..... ( -22.06) >DroSim_CAF1 7747 102 - 1 UGUUUGGAAUUCAAAAAAUAUAUUAGCAUACUUACACAGACCAUUUGUGUGCAGUCAACCAAUUGGUCGACUCAAUU-----UCAUCUUCGGCAGUUCGAAGCUAAA ....(((((((..............((((((...............))))))((((.(((....))).)))).))))-----))).((((((....))))))..... ( -22.06) >DroEre_CAF1 7510 104 - 1 UAU-UUUACUUGAAAAAUUAUAGUAGCAUACUUACACAGACCUUUUG--UGCAGUUAAUCAAUGGGUCUACUUUAUAAAAAAAAAACUUCGGCAGGUCGAAGUUAAU ...-.............(((((((((.....))))..((((((.(((--..........))).))))))....)))))......((((((((....))))))))... ( -19.40) >consensus UAUUUGGAAUUCAAAAAAUAUAUUAGCAUACUUACACAGACCAUUUG__UGCAGUCAACCAAUUGGUCGACUCAAUU_____UAAUCUUCGGCAGUUCGAAGCUAAA ......................(((((...........(((((.(((..((....))..))).)))))...................(((((....)))))))))). (-15.57 = -15.07 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:11 2006