Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,176,292 – 1,176,409 |
Length | 117 |
Max. P | 0.546647 |
Location | 1,176,292 – 1,176,409 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -22.84 |
Energy contribution | -22.92 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -1.83 |
Structure conservation index | 0.64 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1176292 117 + 22224390 GGCGAUCGAUUUGCUCUGCUGCUCCAAUUGCGAUUCCUCUUCUCUUCACUGACGUUUGGUUCGUACGGAGU---GAGCGCCCAUGUGACAUUCCCCUUUGGGCUCGUCUCAUCAAUUGCU ((((((.(((..((((....(((((...(((((..((.....((......)).....)).))))).)))))---))))(((((...(........)..))))).......))).)))))) ( -32.90) >DroSec_CAF1 12254 120 + 1 GGCGAUCGAUUUGCUCUGCUGCUCCAAUUGCGAUUCCACUUCUUCUCACUGACGUUUGGUUUGUACGGAGUACGGAGCGCCCAUGUGCCAUCCCCCUUUGGGCACGUCCCAUCAAUUGCU ((((((.(((..((((((.((((((...(((((..(((...(.((.....)).)..))).))))).))))))))))))....(((((((...........)))))))...))).)))))) ( -39.40) >DroSim_CAF1 27315 120 + 1 GGCGAUCGAUUUGCUCUGCUGCUCCAAUUGCGAUUCCACUUCUCCUCACUGACGUUUGGUUUGUACGGAGUACGGAGCGCCCAUGUGCCAUCCCCCUUUGGGCACGUCCCAUCAAUUGCU ((((((.(((..((((((.((((((...(((((..(((..(.((......)).)..))).))))).))))))))))))....(((((((...........)))))))...))).)))))) ( -38.70) >DroEre_CAF1 11494 110 + 1 GGCGAUCGAUUUGCUCUGGUGCUCCAAUUCCCAAUCCACUUCUU--UACUGGCGUUU-----GCGCGGAGU---UAGCGCCCAUGUGCCGUACCCCUUUAGGUUCGUCCCAUCAAUUGCC ((((((.(((..((.(.((((((..((((((..........(..--....)(((...-----.))))))))---)))))))...).))((.(((......))).))....))).)))))) ( -30.10) >DroYak_CAF1 14302 110 + 1 GGCAAUCGAUUUGCUCUGGUGCUCCAAUUCCGAUUCCUCUUCUC--UACGGACAUUU-----GUAGGGAGU---UGGCGCCCAUGUGCCAUCCCCUUUUGGGUUUGUCCCAUCAAUUGCU ((((((.(((..((.((((.((.((((((((((.......)).(--(((((....))-----)))))))))---))).))))).).))((..(((....)))..))....))).)))))) ( -37.90) >consensus GGCGAUCGAUUUGCUCUGCUGCUCCAAUUGCGAUUCCACUUCUC_UCACUGACGUUUGGUU_GUACGGAGU___GAGCGCCCAUGUGCCAUCCCCCUUUGGGCUCGUCCCAUCAAUUGCU ((((((.(((..((((....(((((......((.......)).........(((.......)))..)))))...))))(((((...............))))).......))).)))))) (-22.84 = -22.92 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:39 2006