Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,603,830 – 10,603,933 |
Length | 103 |
Max. P | 0.998578 |
Location | 10,603,830 – 10,603,933 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.87 |
Mean single sequence MFE | -26.59 |
Consensus MFE | -22.50 |
Energy contribution | -22.78 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.65 |
Structure conservation index | 0.85 |
SVM decision value | 3.12 |
SVM RNA-class probability | 0.998486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10603830 103 + 22224390 AAAAA-----AUGGCACCUCUUCAAUGCGAAUUCGGCAACAAAGAGUGCAAAAUUCCAUGCAGCCAAGGAUUCAGCACAACGCUGAGUUUUAGCUUACA--AAAAUGCCA .....-----.(((((........(((.(((((..(((........)))..))))))))..(((..((((((((((.....)))))))))).)))....--....))))) ( -27.30) >DroSec_CAF1 1253 108 + 1 AAAAAUAAACAUGGCACCUCUUCAAUGCGAAUUCGGCGACAAAGAGUGCAAAAUUCCAUGCAGCCAAGGAUUUAGAAAAACGCUGAGUUUUAGCUUACA--AAAAUGCCA ...........(((((..........((......(((..((..((((.....))))..))..))).(((((((((.......))))))))).)).....--....))))) ( -21.91) >DroSim_CAF1 1256 108 + 1 AAAAAUAAACAUGGCACCUCUUCAAUGCGAAUUCGGCGACAAAGAGUGCAAAAUUCCAUGCAGCCAAGGAUUCAGAAAAACGCUGAGUUUUAGCUUACA--AAAAUGCCA ...........(((((..........((......(((..((..((((.....))))..))..))).(((((((((.......))))))))).)).....--....))))) ( -24.11) >DroEre_CAF1 1268 106 + 1 AAAA--GAUAACGGCAUCUCUUCAAUGCGAAUUCGGCGACAAAGCGUGCUAAAUUCCACGCAGCCAAGGAUUCAGCACAACGCCGAGUUUUAGCUUACA--AAAAUGCCA ....--......(((((.........((((((((((((.....(((((........))))).((..........))....))))))))))..)).....--...))))). ( -30.43) >DroYak_CAF1 1289 108 + 1 AAAA--AAAAAUGGCACCUCUUCAAUGCGAAUUCGGCGACAAAGAGUGCGAAAUUCCACGCAGCCAAGGAUUCAGCACAACGCUGAGUUUUAGCGUACAGAAAAAUGCCA ....--.....(((((....(((..((((.....(((.((.....))(((........))).))).((((((((((.....))))))))))..))))..)))...))))) ( -29.20) >consensus AAAAA_AAAAAUGGCACCUCUUCAAUGCGAAUUCGGCGACAAAGAGUGCAAAAUUCCAUGCAGCCAAGGAUUCAGCACAACGCUGAGUUUUAGCUUACA__AAAAUGCCA ............((((.........((((((((..(((........)))..)))))...)))((..((((((((((.....)))))))))).))...........)))). (-22.50 = -22.78 + 0.28)
Location | 10,603,830 – 10,603,933 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.87 |
Mean single sequence MFE | -30.48 |
Consensus MFE | -27.90 |
Energy contribution | -27.78 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.16 |
Structure conservation index | 0.92 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10603830 103 - 22224390 UGGCAUUUU--UGUAAGCUAAAACUCAGCGUUGUGCUGAAUCCUUGGCUGCAUGGAAUUUUGCACUCUUUGUUGCCGAAUUCGCAUUGAAGAGGUGCCAU-----UUUUU (((((((((--((((.(((((...(((((.....)))))....))))))))(((((((((.((((.....).))).)))))).)))...)))))))))).-----..... ( -32.00) >DroSec_CAF1 1253 108 - 1 UGGCAUUUU--UGUAAGCUAAAACUCAGCGUUUUUCUAAAUCCUUGGCUGCAUGGAAUUUUGCACUCUUUGUCGCCGAAUUCGCAUUGAAGAGGUGCCAUGUUUAUUUUU (((((((((--(.(((((.(((((.....))))).........(((((.(((.(((.........))).))).)))))....)).))).))))))))))........... ( -24.90) >DroSim_CAF1 1256 108 - 1 UGGCAUUUU--UGUAAGCUAAAACUCAGCGUUUUUCUGAAUCCUUGGCUGCAUGGAAUUUUGCACUCUUUGUCGCCGAAUUCGCAUUGAAGAGGUGCCAUGUUUAUUUUU (((((((((--((((.(((((...((((.......))))....))))))))(((((((((.((((.....)).)).)))))).)))...))))))))))........... ( -27.70) >DroEre_CAF1 1268 106 - 1 UGGCAUUUU--UGUAAGCUAAAACUCGGCGUUGUGCUGAAUCCUUGGCUGCGUGGAAUUUAGCACGCUUUGUCGCCGAAUUCGCAUUGAAGAGAUGCCGUUAUC--UUUU .((((((((--(.(((((...((.((((((.((((((((((((.((....)).)).))))))))))......)))))).)).)).))).)))))))))......--.... ( -35.80) >DroYak_CAF1 1289 108 - 1 UGGCAUUUUUCUGUACGCUAAAACUCAGCGUUGUGCUGAAUCCUUGGCUGCGUGGAAUUUCGCACUCUUUGUCGCCGAAUUCGCAUUGAAGAGGUGCCAUUUUU--UUUU (((((((((((.(((.(((((...(((((.....)))))....))))))))(((((((((.((((.....)).)).)))))).))).))))).)))))).....--.... ( -32.00) >consensus UGGCAUUUU__UGUAAGCUAAAACUCAGCGUUGUGCUGAAUCCUUGGCUGCAUGGAAUUUUGCACUCUUUGUCGCCGAAUUCGCAUUGAAGAGGUGCCAUGUUU_UUUUU (((((((((...(((.(((((...(((((.....)))))....))))))))(((((((((.((((.....)).)).)))))).)))....)))))))))........... (-27.90 = -27.78 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:06 2006