Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,596,994 – 10,597,084 |
Length | 90 |
Max. P | 0.819654 |
Location | 10,596,994 – 10,597,084 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 95.41 |
Mean single sequence MFE | -23.26 |
Consensus MFE | -20.02 |
Energy contribution | -20.22 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.86 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819654 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10596994 90 + 22224390 UGUCGCCUGCGAUAACAGAUACAAAAUGAGCGAUUAGCGAAUAGACGUCAAUCGAUGGCUUGUCGAUUUUCUCGAUAACACAAGUGCUCU (((((....))))).............((((((((..((......))..))))..((..(((((((.....)))))))..))...)))). ( -23.10) >DroSec_CAF1 5870 89 + 1 UGUCGCCUGCGAUAACAGAUACAAAAUGAGCGAUUAGCG-AUAGACGUCAAUCGAUGGCUUGUCGAUUUUCUCGAUAACACAAGCGCUCU (((((....))))).............((((((((..((-.....))..))))....(((((((((.....)))).....))))))))). ( -23.70) >DroSim_CAF1 6366 89 + 1 UGUCGCCUGCGAUAACAGAUACAAAAUGAGCGAUUAGCG-AUAUACGUCAAUCGAUGGCUUGUCGAUUUUCUCGAUAACACAAGUGCUCU (((((....))))).............((((((((..((-.....))..))))..((..(((((((.....)))))))..))...)))). ( -22.90) >DroEre_CAF1 5895 89 + 1 UGUCGCCUGCGAUAACAGAUACAAAAUGAGCGAUUAGCG-AUUGACGUCAAUCGAUAGCGUGUCGAUUUUCUCGAUAACAAAAGUGCUCU (((((....))))).............(((((.....((-((((....))))))......((((((.....)))))).......))))). ( -22.20) >DroYak_CAF1 6015 89 + 1 UGUCGCCUGCGAUAACAGAUAGAAAAUGAGCGAUUAGCG-AUUGACGUCAAUCGAUUGAUUGUCGAUUUUCUCGAUAACACAAGUGCUCU (((((.(((......)))..(((((((..((((((((((-((((....)))))).))))))))..))))))))))))............. ( -24.40) >consensus UGUCGCCUGCGAUAACAGAUACAAAAUGAGCGAUUAGCG_AUAGACGUCAAUCGAUGGCUUGUCGAUUUUCUCGAUAACACAAGUGCUCU (((((....))))).............((((((((..((......))..))))......(((((((.....))))))).......)))). (-20.02 = -20.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:00 2006