Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,595,640 – 10,595,760 |
Length | 120 |
Max. P | 0.976194 |
Location | 10,595,640 – 10,595,760 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.09 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -15.81 |
Energy contribution | -15.37 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.25 |
Structure conservation index | 0.93 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10595640 120 + 22224390 CCAAAAACAUUUAAUCGUGUCUAGAUAUUUACCAAAUGGUUAAACCCUUUUAAAACGGCCAUUUACAUAACCCCCUUUUUCAGCAUUAAAGACUUGCGUCUUUAGUUGCUAGUUUAAAUA ........((((((.(.................((((((((...............)))))))).................((((((((((((....)))))))).)))).).)))))). ( -18.96) >DroSec_CAF1 4524 105 + 1 --------------UUGUGUCUAGAUAUUUACCAAUUGGUUAAACCCUUUAAAAACAGUCAUUUACAUAACCCC-AUUUUCAGCAUUAAAGACUUUCGUCUUUAGUUGCUAGUUCAAAUA --------------((((((..((((...........((.....))...........))).)..))))))....-......((((((((((((....)))))))).)))).......... ( -15.55) >DroSim_CAF1 4552 105 + 1 --------------UUGUGUCUAGAUAUUUACCAAAUGGUUAAGCCCUUUAAAAACAGUCAUUUACAUAACCCC-AUUUUCAGCAUUAAAGACUUUCGUCUUUAGUUGCUAGUUCAAAUA --------------((((((..((((.......(((.((.....)).))).......))).)..))))))....-......((((((((((((....)))))))).)))).......... ( -16.34) >consensus ______________UUGUGUCUAGAUAUUUACCAAAUGGUUAAACCCUUUAAAAACAGUCAUUUACAUAACCCC_AUUUUCAGCAUUAAAGACUUUCGUCUUUAGUUGCUAGUUCAAAUA ..............((((....((......(((....)))......))......)))).......................((((((((((((....)))))))).)))).......... (-15.81 = -15.37 + -0.44)
Location | 10,595,640 – 10,595,760 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.09 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -23.86 |
Energy contribution | -23.53 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -2.68 |
Structure conservation index | 0.89 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10595640 120 - 22224390 UAUUUAAACUAGCAACUAAAGACGCAAGUCUUUAAUGCUGAAAAAGGGGGUUAUGUAAAUGGCCGUUUUAAAAGGGUUUAACCAUUUGGUAAAUAUCUAGACACGAUUAAAUGUUUUUGG ....((((((((((..(((((((....))))))).))))....((((.((((((....)))))).)))).....))))))(((....)))......(((((.(((......))).))))) ( -28.90) >DroSec_CAF1 4524 105 - 1 UAUUUGAACUAGCAACUAAAGACGAAAGUCUUUAAUGCUGAAAAU-GGGGUUAUGUAAAUGACUGUUUUUAAAGGGUUUAACCAAUUGGUAAAUAUCUAGACACAA-------------- ....((((((((((..(((((((....))))))).))))((((((-..((((((....))))))))))))....))))))(((....)))................-------------- ( -25.40) >DroSim_CAF1 4552 105 - 1 UAUUUGAACUAGCAACUAAAGACGAAAGUCUUUAAUGCUGAAAAU-GGGGUUAUGUAAAUGACUGUUUUUAAAGGGCUUAACCAUUUGGUAAAUAUCUAGACACAA-------------- ((((((...(((((..(((((((....))))))).))))).((((-((((((((....))))))((((.....))))....))))))..))))))...........-------------- ( -25.70) >consensus UAUUUGAACUAGCAACUAAAGACGAAAGUCUUUAAUGCUGAAAAU_GGGGUUAUGUAAAUGACUGUUUUUAAAGGGUUUAACCAUUUGGUAAAUAUCUAGACACAA______________ ....((((((((((..(((((((....))))))).)))).........((((((....))))))..........))))))(((....))).............................. (-23.86 = -23.53 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:58 2006