Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,593,843 – 10,593,937 |
Length | 94 |
Max. P | 0.869316 |
Location | 10,593,843 – 10,593,937 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 90.69 |
Mean single sequence MFE | -23.41 |
Consensus MFE | -18.22 |
Energy contribution | -18.66 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.94 |
Structure conservation index | 0.78 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10593843 94 + 22224390 CGCUAUAUAUAUCU----------AAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU .((...(((.....----------.(((((((((......))))..)))))...)))...))((((((((((.(((.((((....)))).))).)))))))))) ( -22.50) >DroSec_CAF1 2762 94 + 1 UGCUAUAUAUAUCC----------CAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU .((...(((.....----------.(((((((((......))))..)))))...)))...))((((((((((.(((.((((....)))).))).)))))))))) ( -22.20) >DroSim_CAF1 2778 94 + 1 UGCUAUAUAUAUCC----------CAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU .((...(((.....----------.(((((((((......))))..)))))...)))...))((((((((((.(((.((((....)))).))).)))))))))) ( -22.20) >DroEre_CAF1 2820 104 + 1 UGCUAUAUAUAUCUUUAUCUACAUCAAGUGCAACGCGUUGGUUGGCCGCUUACUUAUUUGGCACGCUAUAUGUACAUAGAUGUUAAUCUCUAUUUGUAUAGUGU .((((((((...........(((((..(((((..((((.((....))(((.........)))))))....)))))...)))))...........)))))))).. ( -24.15) >DroYak_CAF1 2832 104 + 1 UGCUAUAUAUAUCUUUAUCUACAUCAAGCGCAACGCGUUGGUUGGCCGAUUACUUAUUUGGCACGCUAUAUGUACAUAGAUGUUAAUCUCUAUUUGUAUAGUGU .((((((((......(((.(((((..((((((((......))))(((((........))))).))))..))))).)))(((....)))......)))))))).. ( -26.00) >consensus UGCUAUAUAUAUCU__________CAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU .........................(((((((((......))))..)))))...........((((((((((.(((.((((....)))).))).)))))))))) (-18.22 = -18.66 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:56 2006