Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 174,403 – 174,507 |
Length | 104 |
Max. P | 0.587428 |
Location | 174,403 – 174,507 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.58 |
Mean single sequence MFE | -32.24 |
Consensus MFE | -13.55 |
Energy contribution | -14.05 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.42 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 174403 104 - 22224390 AUACGCAGGCUGCCCAAAAUUUCUACCCACCUUUCUACCAUGAGGCUCCUCCACUGGGCCAUUCCAGACCUUACUUUGG---UCACGGCCCGCCUGUAUCGGAAACA ....((((((.(((.............................(((.((......)))))......((((.......))---))..)))..))))))...(....). ( -30.60) >DroGri_CAF1 4291 105 - 1 AUAGUCAGGCGGCGCAGAAUUUCUAUCCACCGUUCUAUCAUGAGGCGCCACCAUUGGGCCAUUCGCGUCCCUAUUUCUCUGGACCCGCUGUCCCCGUU--GGCGAUA ...((((((.(((((((.....))........(((......)))))))).))...(((.((..((.((((..........)))).)).)).)))...)--))).... ( -28.50) >DroSec_CAF1 9933 104 - 1 AUACGCAGGCUGCCCAAAAUUUCUACCCACCUUUCUACCAUGAGGCUCCUCCACUGGGCCACUCCAGACCCUAUUUUGG---ACACGGCACGCCUGUAUCGGAGACA ....((((((((((.............................(((.((......)))))..((((((......)))))---)...)))).))))))...(....). ( -31.90) >DroYak_CAF1 9639 104 - 1 AUACGCAGGCUGCGCAAAAUUUUUAUCCACCAUUCUACCAUGAGGCUCCUCCAUUGGGCCAUUCCAGACCCUAUUUCGG---CCACGGCCCGCCUGUAUCGGAAACA ....((((((...............................(((....)))....(((((...((.((.......))))---....)))))))))))...(....). ( -26.10) >DroMoj_CAF1 26976 105 - 1 ACAGCCAGGCGGCGCAGAACUUCUAUCCGCCCUUCUACCAUGAGGCGCCGCCACUGGGCCACUCGCGUCCCUAUUUCGCCGGACCCGCUGGGCCCGUG--GCCGACA .(.((((((((((((((.....))........(((......)))))))))))...(((((...((.((((..........)))).))...))))).))--)).)... ( -43.90) >DroAna_CAF1 20066 101 - 1 ACUCCCAGGCGGCCCAGAACUUCUAUCCGCCCUUCUACCACGAGGCCCCACCACUGGGCCACUCUCGUCCUUACUUCGG---CCAUGGU---CCUGUCUCGGAGAGC .((((..(((((...((.....))..)))))..........(((((...((((...((((.................))---)).))))---...)))))))))... ( -32.43) >consensus AUACGCAGGCGGCCCAAAAUUUCUAUCCACCCUUCUACCAUGAGGCUCCUCCACUGGGCCACUCCAGACCCUAUUUCGG___ACACGGCCCGCCUGUAUCGGAGACA .....(((((...((..................((......))(((.((......)))))..........................))...)))))........... (-13.55 = -14.05 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:05 2006