Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,548 – 20,664 |
Length | 116 |
Max. P | 0.716399 |
Location | 20,548 – 20,664 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -21.83 |
Consensus MFE | -17.83 |
Energy contribution | -18.17 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.82 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20548 116 + 22224390 GUUACACACUUUUCAAAAAAAUUUUAGUAUUAAUUCUUACUCUACAUGUAACGGAUAAAAUAAUGUAGUUCCA--GAGGAGUUUGUACUCUUGUGGGAAUUUUAUAUUUAUUUACCAC ((((((...((((....))))....((((........)))).....))))))((.((((..((((((((((((--.((((((....)))))).)))))...)))))))..)))))).. ( -23.70) >DroSec_CAF1 7934 106 + 1 AAUAC------------CAAAUUUUAGUAUUAAUUCUUACUCUACAAGUAACCGGUAAAAUAAUGUAGUUCCAAAGAGGAGUUUGUACUCUUGUGGGAAUUAAAUAUUUAUUUACCAC (((((------------.........))))).....(((((.....)))))..((((((..(((((((((((..(.((((((....)))))).).))))))..)))))..)))))).. ( -20.90) >DroSim_CAF1 8023 106 + 1 AAUAC------------CAAAUUUUAGUAUUAAUUCUUACUCUACAAGUAACCGGUAAAAUAAUGUAGUUCCAAAGAGGAGUUUCUACUCUUGUGGGAAUUAAAUAUUUAUUUACCAC (((((------------.........))))).....(((((.....)))))..((((((..(((((((((((..(.((((((....)))))).).))))))..)))))..)))))).. ( -20.90) >consensus AAUAC____________CAAAUUUUAGUAUUAAUUCUUACUCUACAAGUAACCGGUAAAAUAAUGUAGUUCCAAAGAGGAGUUUGUACUCUUGUGGGAAUUAAAUAUUUAUUUACCAC .........................((((........))))............((((((..(((((((((((....((((((....))))))...))))))..)))))..)))))).. (-17.83 = -18.17 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:56 2006