Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,593,593 – 10,593,734 |
Length | 141 |
Max. P | 0.987340 |
Location | 10,593,593 – 10,593,699 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -28.56 |
Consensus MFE | -23.10 |
Energy contribution | -24.22 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.16 |
Mean z-score | -2.41 |
Structure conservation index | 0.81 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10593593 106 - 22224390 AAUCUACAUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCGAUUAAACUUAACCUAACAUUGGAAAAAAUCCAGGGGAAAAGGAUGCGCUAUUCGAGCGCUCGAUU ((((...(((((((((((...(......)...)))))))))))....(((..(((....(((((.....))))))))..)))((.(((((.....))))))))))) ( -28.40) >DroSec_CAF1 2509 106 - 1 AAUAUAUGUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCAAUGAAACUUAACCUAACACUGGAAAAAUUCCAGGGAAAAAGGAUGCGCUAUUCGAGCGCCCGAUU .......(((((((((((...(......)...))))))))))).........(((....(((((.....)))))......)))..(((((.....)))))...... ( -29.40) >DroSim_CAF1 2528 106 - 1 AAUCUACGUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCAAUGAAACUUAACCUAACACUGGUAAAAUUCCAGGGAAAAAGGAUGCGCUAUUCGAGCGCUCGAUU ((((..((((((((((((...(......)...))))))))))))........(((....((((.......))))......)))..(((((.....)))))..)))) ( -31.30) >DroEre_CAF1 2570 102 - 1 AAUCUAUAUUGGAAUCGUAAGCUUUAACGUCGGCGAUUCCUACGAGACUUAACCUAACACUGGUAAAACUCCAGGGGAAAAGGACGCGCUAUUCGAGC----GAUU ..(((.....((((((((..((......))..))))))))....)))(((..(((....((((.......)))))))..)))....((((.....)))----)... ( -26.50) >DroYak_CAF1 2574 106 - 1 AAUCUAUAUUGGAAUCGUUAUCUUUAACGUCGGCGAUUCCAACGAGACUUAACCUAACACUGGUAAAACUCCAGGGGAAAAGGAUGCGCUAUUCGAGCAAUCGAUU ..(((...(((((((((((..(......)..)))))))))))..)))(((..(((....((((.......)))))))..)))..........((((....)))).. ( -27.20) >consensus AAUCUAUAUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCAAUGAAACUUAACCUAACACUGGUAAAACUCCAGGGGAAAAGGAUGCGCUAUUCGAGCGCUCGAUU ......((((((((((((...(......)...))))))))))))........(((....((((.......))))......)))..(((((.....)))))...... (-23.10 = -24.22 + 1.12)
Location | 10,593,619 – 10,593,734 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 89.90 |
Mean single sequence MFE | -29.46 |
Consensus MFE | -24.19 |
Energy contribution | -23.99 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.29 |
Mean z-score | -2.30 |
Structure conservation index | 0.82 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10593619 115 - 22224390 GAUUCGAGGUAACCUCCACCGCCAUCAAA--AAGGGGAAUCUACAUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCGAUUAAACUUAACCUAACAUUGGAAAAAAUCCAGGGGAAA .....((((...))))..((.((......--.(((..((.....(((((((((((...(......)...))))))))))).....))..))).....((((.....))))))))... ( -27.80) >DroSec_CAF1 2535 115 - 1 GAUUCGAGGUAACCCUCACCGCCAUCAAA--AAGGGGAAUAUAUGUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCAAUGAAACUUAACCUAACACUGGAAAAAUUCCAGGGAAAA .....((((....)))).((.........--.(((..((.....(((((((((((...(......)...))))))))))).....))..)))....(((((.....))))))).... ( -30.80) >DroSim_CAF1 2554 115 - 1 GAUUCGAGGUAACCUCCACCGCCAUCAAA--AAGGGGAAUCUACGUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCAAUGAAACUUAACCUAACACUGGUAAAAUUCCAGGGAAAA ..(((.((((....(((.((.........--..))))).....((((((((((((...(......)...)))))))))))).......))))....((((.......)))).))).. ( -30.90) >DroEre_CAF1 2592 115 - 1 GAUUCGAGGUAACCUGCAAGGCCACCAAA--AAUGGGAAUCUAUAUUGGAAUCGUAAGCUUUAACGUCGGCGAUUCCUACGAGACUUAACCUAACACUGGUAAAACUCCAGGGGAAA (((((..(((..........))).(((..--..))))))))......((((((((..((......))..))))))))............(((....((((.......)))))))... ( -28.20) >DroYak_CAF1 2600 117 - 1 GAUUCGAGGUAACCUCCACCGCCACCAAAAAAAAGGGAAUCUAUAUUGGAAUCGUUAUCUUUAACGUCGGCGAUUCCAACGAGACUUAACCUAACACUGGUAAAACUCCAGGGGAAA ..(((((((...))))........((.......(((...(((...(((((((((((..(......)..)))))))))))..))).....)))....((((.......))))))))). ( -29.60) >consensus GAUUCGAGGUAACCUCCACCGCCAUCAAA__AAGGGGAAUCUAUAUUGGAAUCGUAAUCUUUAACGUCAGCGAUUCCAAUGAAACUUAACCUAACACUGGUAAAACUCCAGGGGAAA ..(((.((((..((((.................))))......((((((((((((...(......)...)))))))))))).......))))....((((.......)))).))).. (-24.19 = -23.99 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:56 2006