Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,577,627 – 10,577,731 |
Length | 104 |
Max. P | 0.797766 |
Location | 10,577,627 – 10,577,731 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 79.70 |
Mean single sequence MFE | -20.45 |
Consensus MFE | -19.26 |
Energy contribution | -19.57 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.06 |
Mean z-score | -1.14 |
Structure conservation index | 0.94 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10577627 104 + 22224390 UGACUGAUGGGCAGACUCCCCAUCGCCGAGUCAAGGGCAACUGUACACGCGUCGCCCAACAGCCAACCAACU-ACC--------CACCCAC--CCACCGCCACUUUAACCGAAAA ((.(((.(((((.(((((.........)))))..((....))...........))))).))).)).......-...--------.......--...................... ( -22.00) >DroSim_CAF1 19377 110 + 1 UGACUGAUGGGCAGACUCCCCAUCGCCGAGUCAAGGGCAACUGUACACGA---GCCCUACAGCCAACCGACCAACCCACCAACCCACCCAC--CCAACGCCACUUUAACCGAAAA ((.(((..((((.(((((.........)))))..((....))........---))))..))).))..........................--...................... ( -19.50) >DroEre_CAF1 17550 89 + 1 UGACUGAUGGGCAGACUCCCCAUCGUUGAGUCAAGGGCAACUGUACACAC---ACCCAACGGCCACCCACC-----------------------CACCGCCACUUUAACCAAAAA (((((((((((.......))))))....))))).(((....(((....))---))))...(((........-----------------------....))).............. ( -18.30) >DroYak_CAF1 19109 111 + 1 UGACUGAUGGGCAGACUCCCCAUCGUCGAGUCAAGGGCAACUGUACACGC---GCCCAACAGCCAACCACCCAA-CCACCCACCCAACCACCGCCACCGCCACUUUAACGAAAAA ((.(((.(((((.(((((.........)))))..((....))........---))))).))).)).........-........................................ ( -22.00) >consensus UGACUGAUGGGCAGACUCCCCAUCGCCGAGUCAAGGGCAACUGUACACGC___GCCCAACAGCCAACCAACC_A_C________CACCCAC__CCACCGCCACUUUAACCAAAAA ((.(((.(((((.(((((.........)))))..((....))...........))))).))).)).................................................. (-19.26 = -19.57 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:49 2006