Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,574,498 – 10,574,604 |
Length | 106 |
Max. P | 0.991484 |
Location | 10,574,498 – 10,574,604 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.66 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -12.21 |
Energy contribution | -12.66 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.10 |
Mean z-score | -3.17 |
Structure conservation index | 0.46 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10574498 106 + 22224390 AAAAAGGGCUUCAUAAUCCAACAAAUCCGGUGUGACCUUAUUAAACA---UUAAAGAGCAAUUUAUGUUUUACUGGUCACACUGGCACAGGAGAAAAUUGAAAUCAACU----------- ......(..((((...(((.......(((((((((((.....(((((---(.(((......)))))))))....)))))))))))....)))......))))..)....----------- ( -29.30) >DroEre_CAF1 14443 105 + 1 AAAAAGGGCAUGCUAA------------AGUAUGACCUUAUUAUACU---CGAAAUUGCAAUUUAUGUUUUACCGGUCACACUGGCACAAGUGGAAUUUAAUAUCAAUUUCCAUGCCAAC ......((((((....------------(((((((.....)))))))---.(((((((....(((.(((((((..(((.....)))....))))))).)))...)))))))))))))... ( -26.00) >DroYak_CAF1 15792 114 + 1 GAAAAGGGCAUGCUAAUCAAAUAAAUGCGGUGUGACCUUAUUAUACAACAAAAAAUUGCAACUUAUGUUUUUCCGGUCACACUGGCACAAGAGAAAUUUAAUAGCAAUUUCCAU------ .....(((..(((((..........((((((((((((...........(((....))).(((....))).....))))))))).)))..(((....)))..)))))...)))..------ ( -24.70) >consensus AAAAAGGGCAUGCUAAUC_AA_AAAU_CGGUGUGACCUUAUUAUACA___AAAAAUUGCAAUUUAUGUUUUACCGGUCACACUGGCACAAGAGAAAUUUAAUAUCAAUUUCCAU______ ...........................((((((((((.....................................)))))))))).................................... (-12.21 = -12.66 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:47 2006