Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,569,376 – 10,569,487 |
Length | 111 |
Max. P | 0.533732 |
Location | 10,569,376 – 10,569,487 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.98 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -17.96 |
Energy contribution | -19.28 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.45 |
Structure conservation index | 0.71 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10569376 111 - 22224390 GCUUGAGCUG--UUGGGCUGUUCUCUUGCCAGAAAAUUAUGCAAGUAAAUACGUUUUUAUGGCCCUAAUAAUGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACAAGA .((((..(((--((((((((((......(((((((((..(((..(((((......)))))(((.........)))))).))))))))).))))))....))))).)).)))). ( -26.10) >DroSec_CAF1 9491 112 - 1 ACUUGAGCUGAGUUGGGCUGUUCAUUUGCCAGAAAAUUAUGCUAGUAAAUAAAU-UUUAUGGCCCUAAUAAUGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACGAGA .((((..((.((((((((((((......(((((((((..(((..(((((.....-)))))(((.........)))))).))))))))).))))))....)))))))).)))). ( -26.70) >DroSim_CAF1 8866 113 - 1 ACUUGAGCUGAGUUGGGCUGCUCUCUUGCCAUAAAAUUAUGCAAGUAAAUACAUUUUUAUGGCCCUAAUAAAGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACGAGA .((((..((.(((((((((........(((((((((.(((........)))...)))))))))........))))....((((((((....))).)))))))))))).)))). ( -29.09) >DroEre_CAF1 9475 110 - 1 GCUUGCGCUU--UAGGGCUGUUCUCUGGCCAGCAAAUUUUGUAAAUAAAAACAUUUUUUUGGCCCUAAUAAUGCUGCACAUUUUUUGAAA-CAUUAAAGUCAACUAGACAAGA ((..(((..(--((((((.((......))...((((...(((........)))....)))))))))))...))).)).............-.......(((.....))).... ( -19.40) >consensus ACUUGAGCUG__UUGGGCUGUUCUCUUGCCAGAAAAUUAUGCAAGUAAAUACAUUUUUAUGGCCCUAAUAAUGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACAAGA .(((((((...((((((..........(((((((((.(((........)))...)))))))))))))))...)))....((((((((....))).)))))........)))). (-17.96 = -19.28 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:44 2006