Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,174,741 – 1,174,861 |
Length | 120 |
Max. P | 0.670403 |
Location | 1,174,741 – 1,174,861 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.63 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -27.40 |
Energy contribution | -27.96 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.79 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1174741 120 + 22224390 CUCCACUUUCUCCCAGUGCAAAGCCCUUCGAUUUCGUUUGGUUACAGAAACUGGGAGUCUCGAUCCCUCCAUUUGGGAUUUUUGUGCCAUUGCCUGGCGCUCGGCCUCCUUUCAACGGCA .........((((((((....((((...((....))...))))......))))))))....((((((.......))))))...((((((.....))))))...(((..........))). ( -37.70) >DroSec_CAF1 10760 118 + 1 CUCCGCUUUCUCCCAGUGCAAAGCCCUUU--UUUCGUUUGGUUACAGAAACUGGGAGUCUCGAUCCCUCCAUUUGGGAUUUUCGUGCAAUUGCCUGGCGCUCUGCCUCCUUUCAGCGGCA ..(((((..((((((((....((((....--........))))......))))))))....((((((.......))))))...((((.........)))).............))))).. ( -32.70) >DroSim_CAF1 25807 120 + 1 CUCCGCUUUCUCCCAGUGCAAAGACCUUCAAUUUCGUUUGGUUACAGAAACUGGGAGUCUCGAUCCCUCCAUUUGGGAUUUUCGUGCAAUUGCCUGGCGCUCUGCCUCCUUUCAGCGGCA ..(((((..((((((((.....((((.............))))......))))))))....((((((.......))))))...((((.........)))).............))))).. ( -34.62) >DroEre_CAF1 9808 117 + 1 CUCCGCUUUCUCCCAGUGCAAAGCCCUUCAAUUUCGAUUGGUAACAGGAACUGGGAGUCUCGAUCCCUCCCUUUGGGAUCUUCGUGCAAUUGCCUGGCGCUUGGC---CUUUCAGCGGCA ..(((((..((((((((.(...(((..((......))..))).....).))))))))....((((((.......))))))...(.((....))).(((.....))---)....))))).. ( -38.30) >DroYak_CAF1 12670 102 + 1 CUCCGCUUUCUCCCAGUGCAAAGCCCUUCAAUUUCGAUUGGUAACAGGAACUGGGAGCCUCGA---------------UCUUCGUGCCAUUGCCUGGCGCUUGGC---CUUUCAACGGCA ...((....((((((((.(...(((..((......))..))).....).))))))))...)).---------------.....((((((.....))))))...((---(.......))). ( -30.70) >consensus CUCCGCUUUCUCCCAGUGCAAAGCCCUUCAAUUUCGUUUGGUUACAGAAACUGGGAGUCUCGAUCCCUCCAUUUGGGAUUUUCGUGCAAUUGCCUGGCGCUCGGCCUCCUUUCAGCGGCA ..(((((..((((((((.......((.............))........))))))))....((((((.......))))))...((((.........)))).............))))).. (-27.40 = -27.96 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:37 2006