Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,563,528 – 10,563,626 |
Length | 98 |
Max. P | 0.985639 |
Location | 10,563,528 – 10,563,626 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -24.48 |
Energy contribution | -24.22 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -2.92 |
Structure conservation index | 0.90 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10563528 98 + 22224390 UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGCCGAAAGUUAAAUGAACUGA-----ACUGUGGAUG-- ...((((((..................((((((.(((.......))).))))))...(((((((((((.(....)))))..)))))))-----))))))....-- ( -27.90) >DroSec_CAF1 3679 98 + 1 UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGUCGUAAGUUAAAUGAACUGA-----ACUGUGAAUG-- ...((((((..................((((((.(((.......))).))))))...(((((((((((.(....)))))..)))))))-----))))))....-- ( -26.70) >DroSim_CAF1 3680 98 + 1 UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGUCGUAAGUUAAAUGAACUGA-----ACUGUGAAUG-- ...((((((..................((((((.(((.......))).))))))...(((((((((((.(....)))))..)))))))-----))))))....-- ( -26.70) >DroEre_CAF1 3634 105 + 1 UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGCCGUAUGUUAAAUGAACUGAACUGAACUGUGGAUGGA ...((((((..................((((((.(((.......))).))))))..(((((((((((((.....)))))..))))))))....))))))...... ( -27.90) >consensus UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGCCGUAAGUUAAAUGAACUGA_____ACUGUGAAUG__ ...((((((..................((((((.(((.......))).))))))...((((((((((((.....)))))..))))))).....))))))...... (-24.48 = -24.22 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:41 2006