Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,563,356 – 10,563,501 |
Length | 145 |
Max. P | 0.999099 |
Location | 10,563,356 – 10,563,464 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.57 |
Mean single sequence MFE | -26.91 |
Consensus MFE | -18.54 |
Energy contribution | -19.34 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.85 |
Structure conservation index | 0.69 |
SVM decision value | 3.37 |
SVM RNA-class probability | 0.999099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10563356 108 - 22224390 CCCAUCAAC--C--C------CAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAGGACAGCUGUGGUCAGCAAAAUAGAGAAACAGAUUUUACACUUAUCCCAAAUG-CAA ...((((((--(--.------(((......))).)))).(((..((((((((((((.............))))))))))))....))).....)))...................-... ( -25.42) >DroSec_CAF1 3521 103 - 1 CC-----GU--C--C------CAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGUUCAGCAAAAUAGAGAAAACGAUUUUACACUUAUGCCAAUUG-CAC .(-----((--.--(------(((........))))...(((..((((((..((((.............))))..))))))....)))...)))............(((.....)-)). ( -19.82) >DroSim_CAF1 3522 103 - 1 CC-----GU--C--C------CAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGGUCAGCAAAAUAGAGAAAACGAUUUUACACUUAUCCCAAAUG-UGC ..-----..--.--.------.....((((((.(((...(((..((((((((((((.............))))))))))))....))).....(((.........)))))).)))-))) ( -30.62) >DroEre_CAF1 3491 89 - 1 CC-----CU--CCUC------CAUUCGCACAAGUGCUUACUCACAUGCUGGCCACAAA-------CAGUUGUGGUCAGCAGAAUAGAGACAG---------ACUUAUCCCAAGUC-CAC ..-----..--.(((------.(((((((....))).........((((((((((((.-------...)))))))))))))))).)))...(---------((((.....)))))-... ( -32.30) >DroYak_CAF1 3563 105 - 1 C------CUUCCCUCCCCUGGCAUUCGCACAUGUGCUUACUCAGUUGCUGGCCACGAA-------CAGCGAUGGUCAGCAAAAUAGAGAACGAGAUUUUACAUUCAUCCCAAAUUGCA- .------.....(((....(((((........)))))..(((..((((((((((((..-------...)).))))))))))....)))...)))........................- ( -26.40) >consensus CC_____CU__C__C______CAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAA_GACAGCUGUGGUCAGCAAAAUAGAGAAAAAGAUUUUACACUUAUCCCAAAUG_CAC .........................(((....)))....(((..((((((((((((.............))))))))))))....)))............................... (-18.54 = -19.34 + 0.80)
Location | 10,563,395 – 10,563,501 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -20.12 |
Consensus MFE | -14.57 |
Energy contribution | -14.82 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.72 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10563395 106 - 22224390 AACAUGACCCCCUGCACCCCCUGCACCGCCC-CAUCCCCCCAUCAACC--CCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAGGACAGCUGUGGUCAGC ....(((.....((((.....))))......-............((((--.(((......))).))))..)))...((((((((((.............)))))))))) ( -21.92) >DroSec_CAF1 3560 92 - 1 AACAUGACCGCC---------UGCACCGCCC-CAUCACCC-----GUC--CCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGUUCAGC ....(((((((.---------(((.......-........-----...--......)))...))))))).......((((..((((.............))))..)))) ( -17.38) >DroSim_CAF1 3561 92 - 1 AACAUGACCCCC---------UGCACCGCCC-CAUCACCC-----GUC--CCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGGUCAGC ....((((((..---------(((.......-........-----...--......)))...).))))).......((((((((((.............)))))))))) ( -19.18) >DroEre_CAF1 3521 88 - 1 AACAUGACCCCC---------UGCAACAACAGCAACCCCC-----CUCCUCCAUUCGCACAAGUGCUUACUCACAUGCUGGCCACAAA-------CAGUUGUGGUCAGC ...(((......---------(((.......)))......-----...........(((....))).......)))(((((((((((.-------...))))))))))) ( -22.00) >consensus AACAUGACCCCC_________UGCACCGCCC_CAUCACCC_____GUC__CCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGGUCAGC ..............................................................(((......)))..((((((((((.............)))))))))) (-14.57 = -14.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:40 2006