Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,546,481 – 10,546,640 |
Length | 159 |
Max. P | 0.788559 |
Location | 10,546,481 – 10,546,600 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.82 |
Mean single sequence MFE | -37.15 |
Consensus MFE | -28.92 |
Energy contribution | -28.80 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10546481 119 + 22224390 UUGCAUUUUGGGGGCACAGUAAUCUC-UAUUUACAUUUGUCGAAACACGAUUUCAAGCUUUGCUUCUUUCGUAGAAGUAGCACCCCUAUGCGGUUGCACGUGCCUGCAGCAAUUUGCGGC .(((((...((((((...((((....-...))))....((((.....)))).........(((((((.....))))))))).)))).)))))((((((..(((.....)))...)))))) ( -34.10) >DroSec_CAF1 72810 118 + 1 UUUCAUUUUGGGGGCACAGUAAUCUC-UAUUUACAUUUGUCGAAACACGAUUUGAAGCGUUGCUUCAUUCGUAGAAGCAGCAAC-CUGUGCGGUUGCACGUGCCUGCAGCAAUUUGCGGC ........((.((((((.((((....-...))))............((((..((((((...)))))).)))).......(((((-(.....))))))..)))))).))((.....))... ( -36.30) >DroSim_CAF1 76830 118 + 1 UUUCAUUUUGGGGGCACAGUAAUCUC-UAUUUACAUUUGUCGAAACACGAUUUGAAGCGUUGCUUCAUUCGUAGAAGCAGCAAC-CUGUGCGGUUGCACGUGCCUGCAGCAAUUUGCGGC ........((.((((((.((((....-...))))............((((..((((((...)))))).)))).......(((((-(.....))))))..)))))).))((.....))... ( -36.30) >DroYak_CAF1 76290 115 + 1 UGGCAUUCUGGGGGCACAGAAACCUUUUAUUUAUAUG----GAUACACCAUUGGCAGUGUUGCUUCUUUUCGAGAAGCAGCAAC-CUAUGCGGUUGCACGUGCCUGCAGCAAUUUGCGGC ..(((..(((.((((((...((((..........(((----(.....))))..(((.(((((((((((...)))))))))))..-...)))))))....)))))).))).....)))... ( -41.90) >consensus UUGCAUUUUGGGGGCACAGUAAUCUC_UAUUUACAUUUGUCGAAACACGAUUUGAAGCGUUGCUUCAUUCGUAGAAGCAGCAAC_CUAUGCGGUUGCACGUGCCUGCAGCAAUUUGCGGC ........((.((((((.((((((....................................((((((.......))))))(((......)))))))))..)))))).))((.....))... (-28.92 = -28.80 + -0.12)
Location | 10,546,481 – 10,546,600 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.82 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -24.69 |
Energy contribution | -25.25 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.73 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10546481 119 - 22224390 GCCGCAAAUUGCUGCAGGCACGUGCAACCGCAUAGGGGUGCUACUUCUACGAAAGAAGCAAAGCUUGAAAUCGUGUUUCGACAAAUGUAAAUA-GAGAUUACUGUGCCCCCAAAAUGCAA ((((((......))).)))..........((((.((((..(....(((.(....)..(((....(((((((...)))))))....))).....-.))).....)..))))....)))).. ( -30.00) >DroSec_CAF1 72810 118 - 1 GCCGCAAAUUGCUGCAGGCACGUGCAACCGCACAG-GUUGCUGCUUCUACGAAUGAAGCAACGCUUCAAAUCGUGUUUCGACAAAUGUAAAUA-GAGAUUACUGUGCCCCCAAAAUGAAA ((.((.....)).)).(((((((((((((.....)-))))).))....((((.((((((...))))))..))))(((((.((....)).....-)))))....)))))............ ( -33.20) >DroSim_CAF1 76830 118 - 1 GCCGCAAAUUGCUGCAGGCACGUGCAACCGCACAG-GUUGCUGCUUCUACGAAUGAAGCAACGCUUCAAAUCGUGUUUCGACAAAUGUAAAUA-GAGAUUACUGUGCCCCCAAAAUGAAA ((.((.....)).)).(((((((((((((.....)-))))).))....((((.((((((...))))))..))))(((((.((....)).....-)))))....)))))............ ( -33.20) >DroYak_CAF1 76290 115 - 1 GCCGCAAAUUGCUGCAGGCACGUGCAACCGCAUAG-GUUGCUGCUUCUCGAAAAGAAGCAACACUGCCAAUGGUGUAUC----CAUAUAAAUAAAAGGUUUCUGUGCCCCCAGAAUGCCA ((.((.....)).)).((((.((((((((.....)-)))))(((((((.....)))))))..)))))).((((.....)----)))..........((((((((......))))).))). ( -39.60) >consensus GCCGCAAAUUGCUGCAGGCACGUGCAACCGCACAG_GUUGCUGCUUCUACGAAAGAAGCAACGCUUCAAAUCGUGUUUCGACAAAUGUAAAUA_GAGAUUACUGUGCCCCCAAAAUGAAA ((.((.....)).)).(((((..((((((.....).)))))((((((.......))))))((((........))))...........................)))))............ (-24.69 = -25.25 + 0.56)
Location | 10,546,520 – 10,546,640 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.31 |
Mean single sequence MFE | -44.18 |
Consensus MFE | -28.73 |
Energy contribution | -29.73 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.95 |
Structure conservation index | 0.65 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10546520 120 - 22224390 AAGGCUCUACCGAGCGAAGAGGCAGGCGGUGGUCCUUCGAGCCGCAAAUUGCUGCAGGCACGUGCAACCGCAUAGGGGUGCUACUUCUACGAAAGAAGCAAAGCUUGAAAUCGUGUUUCG ...((((....))))...(((((.((.(((((..((((..((((((......))).)))..((((....)))).))))..))))).))((((...((((...))))....))))))))). ( -37.70) >DroSec_CAF1 72849 119 - 1 AAUGCUCUACCGAGCGAAGAGGCAGGCGGUGGUCCUUCGAGCCGCAAAUUGCUGCAGGCACGUGCAACCGCACAG-GUUGCUGCUUCUACGAAUGAAGCAACGCUUCAAAUCGUGUUUCG ..(((((....)))))..(((((((((((..(.(((....((((((......))).)))..((((....))))))-))..))))))..((((.((((((...))))))..))))))))). ( -45.60) >DroSim_CAF1 76869 119 - 1 AAGGCUCUACCGAGCGAAGAGGCAGGCGGUGGUCGUUCGAGCCGCAAAUUGCUGCAGGCACGUGCAACCGCACAG-GUUGCUGCUUCUACGAAUGAAGCAACGCUUCAAAUCGUGUUUCG ...((((....))))((((.(((((.(.(((((.((.((.((((((......))).))).)).)).)))))...)-.))))).))))(((((.((((((...))))))..)))))..... ( -47.00) >DroYak_CAF1 76327 114 - 1 AACGCUCCACCGAGUG----GAGAGCCGUUGGUCCUUCAAGCCGCAAAUUGCUGCAGGCACGUGCAACCGCAUAG-GUUGCUGCUUCUCGAAAAGAAGCAACACUGCCAAUGGUGUAUC- ....((((((...)))----))).(((((((((.......((((((......))).)))..((((((((.....)-)))))(((((((.....)))))))))...))))))))).....- ( -46.40) >consensus AAGGCUCUACCGAGCGAAGAGGCAGGCGGUGGUCCUUCGAGCCGCAAAUUGCUGCAGGCACGUGCAACCGCACAG_GUUGCUGCUUCUACGAAAGAAGCAACGCUUCAAAUCGUGUUUCG ...((((....))))...((((((.(..(((((....((.((((((......))).))).))....)))))..........((((((.......))))))...........).)))))). (-28.73 = -29.73 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:36 2006