Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,544,434 – 10,544,543 |
Length | 109 |
Max. P | 0.935009 |
Location | 10,544,434 – 10,544,543 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.28 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -23.03 |
Energy contribution | -23.20 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.65 |
Structure conservation index | 0.84 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10544434 109 + 22224390 CUU----AUAUUACUCUAA----UGUU--ACUCUUAUUGCUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG ...----............----((((--(((...(((((...-...)))))((((((....))))))((..(((((...((.((....)).))..)))))..)).......))))))). ( -26.00) >DroSec_CAF1 70797 109 + 1 CUU----UUAUUACACUAA----UGUU--ACUCUUACUGCUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCAGCUGGACAAACAACUAGUAGCAG ...----............----((((--(((...(((((...-...)))))((((((....))))))((..((((....((.((....)).))...))))..)).......))))))). ( -26.50) >DroSim_CAF1 74811 109 + 1 CUU----UUAUUACACUAA----UGCU--ACUCUUACUGCUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG ...----............----((((--(((...(((((...-...)))))((((((....))))))((..(((((...((.((....)).))..)))))..)).......))))))). ( -30.70) >DroEre_CAF1 71740 104 + 1 ------GAUAUUAUUCUAA----UGUU--CCUC---CUGUUUG-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG ------.............----((((--....---.((((((-((.((...((((((....))))))..)).)))).)))).....))))...((((((((........)))))))).. ( -28.10) >DroYak_CAF1 74142 112 + 1 CUUAUAGAUAUUCGUCUAA----UGUUUUACUC---CUGUUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG .............(((.((----((((......---((((...-...)))).((((((....))))))..........))))))))).......((((((((........)))))))).. ( -27.70) >DroAna_CAF1 76437 110 + 1 CAA----A----AUCCUAAAUCUUGUU--UCUUGUGUCUUUUAUUUUCCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG ...----.----..........(((((--..((((((..........(((..((((((....)))))))))...))))))....))))).....((((((((........)))))))).. ( -25.52) >consensus CUU____AUAUUACUCUAA____UGUU__ACUCUUACUGCUUA_CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG ................................................((((((((((....))))))..(((((.......)))))...))))((((((((........)))))))).. (-23.03 = -23.20 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:33 2006