Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,544,246 – 10,544,366 |
Length | 120 |
Max. P | 0.832267 |
Location | 10,544,246 – 10,544,366 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.00 |
Mean single sequence MFE | -38.14 |
Consensus MFE | -36.16 |
Energy contribution | -36.32 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.25 |
Structure conservation index | 0.95 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10544246 120 - 22224390 UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC ...((((.....((((.((((..((((.(((.((((....)))).))).))))..)))).)))).(((((((......)))))))..))))(((((((.((....)))))))))...... ( -38.80) >DroSec_CAF1 70608 120 - 1 UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC ...((((.....((((.((((..((((.(((.((((....)))).))).))))..)))).)))).(((((((......)))))))..))))(((((((.((....)))))))))...... ( -38.80) >DroSim_CAF1 74622 120 - 1 UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC ...((((.....((((.((((..((((.(((.((((....)))).))).))))..)))).)))).(((((((......)))))))..))))(((((((.((....)))))))))...... ( -38.80) >DroEre_CAF1 71580 120 - 1 AGAGUCCGCCAAGGCUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCAUGACAGUAACGAGUUCUGCCGCCGUCGC .((...((.((..((((((((..((((.(((.((((....)))).))).))))..))))......(((((((((((...((....)))))))))))))....))))..)).))...)).. ( -39.40) >DroYak_CAF1 73973 120 - 1 AAUGUCCAACAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACCCUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCAUGACAGUAACGAGUUCUGUCGCCGUCGC ............((((.(((...((((.(((.((((....)))).))).))))...))).))))..((((((((((...((....))))))))))))(..(((.((......)))))..) ( -34.90) >consensus UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC ............((((.((((..((((.(((.((((....)))).))).))))..)))).))))..((((((((((...((....))))))))))))(..(((.((......)))))..) (-36.16 = -36.32 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:32 2006