Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,543,502 – 10,543,616 |
Length | 114 |
Max. P | 0.781791 |
Location | 10,543,502 – 10,543,616 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.44 |
Mean single sequence MFE | -33.86 |
Consensus MFE | -19.12 |
Energy contribution | -18.88 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.90 |
Structure conservation index | 0.56 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10543502 114 + 22224390 UGGAGUGGUUUGGGAUCCCAAAAAGGGAUAUGUG------UGCUCUGCAGCUUAAAGCGAUUUAAGAGGCCACUUUUUGGGGCAGGCAACCGAAGGUUACACACGUCAUUCAAUCGGUAG ..(((((((((((.(((((.....))))).(((.------((((((((..((((((....))))))..))........)))))).))).)))))(......)...))))))......... ( -32.80) >DroSec_CAF1 69909 106 + 1 UGGAGUGGU-UGGGAUCCCAAAAAGGGAUAUAUG------UGCUCUGCAGCUUUAAGUGAUUUAAGAGGCAACUCUUUGGGGCAGGCAAACCAAGGUUAUACAC-------AAUCGGUAG ...(.((((-(((((((((.....))))).....------(((.((((.((.....)).....(((((....)))))....)))))))..))..(......).)-------))))).).. ( -28.90) >DroSim_CAF1 73892 106 + 1 UGGAGUGGU-UGGGAUCCCAAAAAGGGAUAUAUG------UGCUCUGCAGCUUAAAGCGAUUUAAGAGGCAACUCUUUGGGGCAGGCAAACCAAGGUUAUACAC-------AAUCGGUAG ...(.((((-(((((((((.....))))).....------(((.((((.((.....)).....(((((....)))))....)))))))..))..(......).)-------))))).).. ( -31.20) >DroEre_CAF1 70868 102 + 1 UGG-GUGGU-UGAGAUUCCAAAAAGGGAUAUACGAGCAUGUGCUCUGCGGCUUAAAGUGGUUUAAGAGGCAACUUUUUGGGGCAA----------------CACGCGACUCAAACGCAGG ...-(((.(-((((..(((((((((........((((....))))(((..((((((....))))))..))).)))))))))((..----------------...))..))))).)))... ( -32.70) >DroYak_CAF1 73144 114 + 1 UGGGGCGGU-UGUGAUCCCAAAAAGGGAUAUGUGAA----UGCU-UAAAGCUUAAAGCGAUUCAAGAGGCCACUUUUUGGGGCAAGCAACCCAAGGUUGCACACGUGAUUCAAUCGCUAG ...((((((-((((.((((((((((((.....((((----((((-(........)))).))))).....)).)))))))))))).((((((...))))))..........)))))))).. ( -43.70) >consensus UGGAGUGGU_UGGGAUCCCAAAAAGGGAUAUAUG______UGCUCUGCAGCUUAAAGCGAUUUAAGAGGCAACUUUUUGGGGCAGGCAAACCAAGGUUACACACG__A_UCAAUCGGUAG ....(((.......(((((.....)))))...........((((((...((.....)).....(((((....))))).)))))).................)))................ (-19.12 = -18.88 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:31 2006