Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,542,011 – 10,542,123 |
Length | 112 |
Max. P | 0.926685 |
Location | 10,542,011 – 10,542,123 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.67 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -8.70 |
Energy contribution | -9.10 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.21 |
Mean z-score | -2.06 |
Structure conservation index | 0.31 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10542011 112 + 22224390 CAAUGCAUCAAAUUUCAGGGCCUGAACC--AAAAAAAAAAGUACCAAACAUGACAUGGACAUG------AGAAAGGUGCUCGGGAUGAGGCUGAAGACCCAGGGCAUCUGGUGCAAGGAU ...((((((...(((((((.......))--..........((.(((.........))))).))------))).(((((((((((.............))).))))))))))))))..... ( -29.02) >DroSec_CAF1 68407 102 + 1 CAAUGCAUCAAAUUUCAGGGCCUGAACC--GAA----AAAGUACCAAACAUGACAUGGACAUG------AGAAAGGUGCUCAGGAUGAGGCU------CCAGGACAUCUGGUGCAAGGAU ...(((((((.((.((.((((((.(.((--...----..((((((...((((.......))))------.....))))))..)).).)))))------)...)).)).)))))))..... ( -31.70) >DroSim_CAF1 72384 102 + 1 CAAUGCAUCAAAUUUCAGGGCCUGAACC--GAA----AAAGUACCAGACAUGACAUGGACAUG------AGAAAGGUGCUCAGGAUGAGGCU------CCAGGACAUCUGGUGCAAGGAU ...(((((((.((.((.((((((.(.((--...----..((((((...((((.......))))------.....))))))..)).).)))))------)...)).)).)))))))..... ( -31.70) >DroEre_CAF1 69653 105 + 1 CAAUGCAUCAAAUUUCAGGACCCGAACG--GAA----AAAGCACCAAACAUGACAUGGACAUGGACAUGGAAAAGGUGCUCGGAACGAGGCUGAGCACCCAGUGCA---------CGUGU ....((((....((((.(........).--)))----)..((((....((((.(((....)))..)))).....(((((((((.......)))))))))..)))).---------.)))) ( -28.50) >DroYak_CAF1 71707 98 + 1 CAAUGCAUCAAAUUUCUGGGCACCAACCCAAAA----AAAGUACCAAACAUGACAUGGACAUGGGAAAGGGAAAGGUACUCGGGAUAAGGAUGGACA------------------AGGAU .....((((....(((((((.(((..(((....----...((.....))....(((....))).....)))...))).)))))))....))))....------------------..... ( -21.40) >consensus CAAUGCAUCAAAUUUCAGGGCCUGAACC__GAA____AAAGUACCAAACAUGACAUGGACAUG______AGAAAGGUGCUCGGGAUGAGGCUG___A_CCAGGACAUCUGGUGCAAGGAU ............(((((...((((...............((((((...((((.......))))...........)))))))))).))))).............................. ( -8.70 = -9.10 + 0.40)
Location | 10,542,011 – 10,542,123 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.67 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -7.41 |
Energy contribution | -7.09 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.35 |
Mean z-score | -1.68 |
Structure conservation index | 0.28 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10542011 112 - 22224390 AUCCUUGCACCAGAUGCCCUGGGUCUUCAGCCUCAUCCCGAGCACCUUUCU------CAUGUCCAUGUCAUGUUUGGUACUUUUUUUUUU--GGUUCAGGCCCUGAAAUUUGAUGCAUUG .....((((.(((((.....((((((..((((.......(((.(((.....------((((.......))))...))).)))........--)))).))))))....))))).))))... ( -29.16) >DroSec_CAF1 68407 102 - 1 AUCCUUGCACCAGAUGUCCUGG------AGCCUCAUCCUGAGCACCUUUCU------CAUGUCCAUGUCAUGUUUGGUACUUU----UUC--GGUUCAGGCCCUGAAAUUUGAUGCAUUG .....((((.(((((.((..((------.((((...((.(((.(((.....------((((.......))))...))).))).----...--))...)))))).)).))))).))))... ( -27.70) >DroSim_CAF1 72384 102 - 1 AUCCUUGCACCAGAUGUCCUGG------AGCCUCAUCCUGAGCACCUUUCU------CAUGUCCAUGUCAUGUCUGGUACUUU----UUC--GGUUCAGGCCCUGAAAUUUGAUGCAUUG .....((((.(((((.((..((------.((((...((.(((.(((.....------((((.......))))...))).))).----...--))...)))))).)).))))).))))... ( -27.70) >DroEre_CAF1 69653 105 - 1 ACACG---------UGCACUGGGUGCUCAGCCUCGUUCCGAGCACCUUUUCCAUGUCCAUGUCCAUGUCAUGUUUGGUGCUUU----UUC--CGUUCGGGUCCUGAAAUUUGAUGCAUUG ....(---------((((..((((..((((.((((..(.(((((((.....((((..(((....))).))))...))))))).----...--.)..))))..)))).))))..))))).. ( -28.90) >DroYak_CAF1 71707 98 - 1 AUCCU------------------UGUCCAUCCUUAUCCCGAGUACCUUUCCCUUUCCCAUGUCCAUGUCAUGUUUGGUACUUU----UUUUGGGUUGGUGCCCAGAAAUUUGAUGCAUUG .....------------------....((((........(((((((...........((((.......))))...)))))))(----((((((((....)))))))))...))))..... ( -20.94) >consensus AUCCUUGCACCAGAUGCCCUGG_U___CAGCCUCAUCCCGAGCACCUUUCU______CAUGUCCAUGUCAUGUUUGGUACUUU____UUC__GGUUCAGGCCCUGAAAUUUGAUGCAUUG .............................((.(((.(((((((.................(((((.........))).)).............)))))))..........))).)).... ( -7.41 = -7.09 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:29 2006