Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,541,443 – 10,541,541 |
Length | 98 |
Max. P | 0.564231 |
Location | 10,541,443 – 10,541,541 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -25.49 |
Consensus MFE | -19.82 |
Energy contribution | -19.94 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.50 |
Structure conservation index | 0.78 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564231 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10541443 98 + 22224390 UCCACCUUCACACCUCGCUCUCG------CCCACGUCCACGUCCUCGUAUUCGUAUUCGUCCUGGCAACUUAAUUAUGCAGCUGUGCCAGGUCUAGGACAAGGA ....((((........((....)------)....(((((((....)))..........(.(((((((.(..............)))))))).)..)))))))). ( -23.74) >DroSec_CAF1 67847 93 + 1 UCCACCUUCACAC-----------CCACGUCCACGUUCACGUCCUCGUAUUCGUAUUCGUCCUGGCAACUUAAUUAUGCAGCUGUGCCAGGUCUAGGACAAGGA .............-----------((..(((((((...(((....)))...)))....(.(((((((.(..............)))))))).)..))))..)). ( -23.94) >DroSim_CAF1 71813 104 + 1 UCCACCUUCACACCUCGUUCUCGCCCACGUCCACGUUCACGUCCUCGUAUUCGUAUUCGUCCUGGCAACUUAAUUAUGCAGCUGUGCCAGGUCUAGGACAAGGA ....((((.......((....)).....(((((((...(((....)))...)))....(.(((((((.(..............)))))))).)..)))))))). ( -24.84) >DroYak_CAF1 70516 93 + 1 CCCACGCCCACGU-----------CCACGUUCACGUUCACGUCCACGUCCACGUCCUCGUCCUGGCAACUUAAUUAUGCAGCUGUGCCGGGUCUAGGACAAGGA .(((((...((((-----------..(((....)))..))))...)))....(((((.(.(((((((.(..............)))))))).).)))))..)). ( -29.44) >consensus UCCACCUUCACAC___________CCACGUCCACGUUCACGUCCUCGUAUUCGUAUUCGUCCUGGCAACUUAAUUAUGCAGCUGUGCCAGGUCUAGGACAAGGA ............................(((((((...(((....)))...)))....(.(((((((.(..............)))))))).)..))))..... (-19.82 = -19.94 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:27 2006