| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,541,153 – 10,541,243 |
| Length | 90 |
| Max. P | 0.830857 |
| Location | 10,541,153 – 10,541,243 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 74.38 |
| Mean single sequence MFE | -32.37 |
| Consensus MFE | -22.05 |
| Energy contribution | -23.50 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10541153 90 + 22224390 ----------------------UGUCCUGCCGCAAUGUGGCCGUAAUGACGGUAUCAGGCCCCAGGACCGCAAUAGACCAGCAACCUGGAGCAGCAGGAACCACCCAGGAAA--- ----------------------..((((((.((..(((((((((....))(((.....)))...)).))))).....((((....)))).)).)))))).((.....))...--- ( -30.30) >DroSec_CAF1 67540 85 + 1 ----------------------UGUCCUGCCGCAAUGUGGCCGUAAUGACGGUAUCAGGCCCCAGGACCGCAUUAGACCAGCAACCUGGAGCAGCAGGGAACACCCU-------- ----------------------..((((((.(((((((((((((....))(((.....)))...)).)))))))...((((....)))).)).))))))........-------- ( -30.50) >DroYak_CAF1 70177 113 + 1 UCCUGCCUGGUGUCCUGCCUGGUGUCCUGCCGCAAUGUGGCCGUAAUGACGGUAUCAGGCCCCAGGACCGCAUUAGACCAGCAACCAG--CCAGCAAGAACCACCCACUAGCCAC ..(((.((((((((((((((((((.((.(((((...))))).((....))))))))))))...))))).((.........)).)))))--.)))..................... ( -36.30) >consensus ______________________UGUCCUGCCGCAAUGUGGCCGUAAUGACGGUAUCAGGCCCCAGGACCGCAUUAGACCAGCAACCUGGAGCAGCAGGAACCACCCA__A_____ ........................((((((.(((((((((((((....))(((.....)))...)).)))))))...((((....)))).)).))))))................ (-22.05 = -23.50 + 1.45)
| Location | 10,541,153 – 10,541,243 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 74.38 |
| Mean single sequence MFE | -38.13 |
| Consensus MFE | -29.25 |
| Energy contribution | -30.03 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10541153 90 - 22224390 ---UUUCCUGGGUGGUUCCUGCUGCUCCAGGUUGCUGGUCUAUUGCGGUCCUGGGGCCUGAUACCGUCAUUACGGCCACAUUGCGGCAGGACA---------------------- ---...((.....)).(((((((((.(((((((((.........)))).)))))((((((((......)))).)))).....)))))))))..---------------------- ( -37.50) >DroSec_CAF1 67540 85 - 1 --------AGGGUGUUCCCUGCUGCUCCAGGUUGCUGGUCUAAUGCGGUCCUGGGGCCUGAUACCGUCAUUACGGCCACAUUGCGGCAGGACA---------------------- --------.........((((((((.(((((((((.........)))).)))))((((((((......)))).)))).....))))))))...---------------------- ( -35.90) >DroYak_CAF1 70177 113 - 1 GUGGCUAGUGGGUGGUUCUUGCUGG--CUGGUUGCUGGUCUAAUGCGGUCCUGGGGCCUGAUACCGUCAUUACGGCCACAUUGCGGCAGGACACCAGGCAGGACACCAGGCAGGA ..((((((..((.....))..))))--))..(((((.((((..((..((((((.((((((((......)))).)))).(.....).))))))..))....))))....))))).. ( -41.00) >consensus _____U__UGGGUGGUUCCUGCUGCUCCAGGUUGCUGGUCUAAUGCGGUCCUGGGGCCUGAUACCGUCAUUACGGCCACAUUGCGGCAGGACA______________________ .................((((((((.(((((((((.........)))).)))))((((((((......)))).)))).....))))))))......................... (-29.25 = -30.03 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:26 2006